Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2533 ATGGGTGGTGGTCCGCCTTCTTTCAATCCATTCACCGGATTTTCCTTTTTCTTCTTCATCCTCTACACCACAATCATACTCCTTGCAGCCGCTGCTGCTTCTGAAACCTCATCTTCTTCTATAAGTTCCACCGTCTATGACGACGTCGCGGGAAAAAATTCGCTAGAACCGCCATCATTGGGAAGTCAACGTGGCGCAGGGGAGAGAGAGTCTCCTTTCAAGCCCACCGTGGCCATTCTAATTGGGGTATCCACAACCCTGTTTTTCACCACCTTTGTTTTTCTTCTGTGTGTTAAACTATGTAAACCAGAGGAGGACGCCCAAAGGAATTCACATACAGGAGGTGGCCATTTGGGAAGAAAGAACTCCGGCATTGACCGGGTTGTGATCGAGTCGTTACCCATTTTCAGATTCGGATCTTTAAGGGGCCAAAAAGAGGGACTCGAATGCGCCGTCTGCCTGACTCAATTTGAGACCGTGGAGGTTCTTCGGCTGCTTCCAAAATGCAAGCACGCCTTCCATGTCGAATGCGTGGACACTTGGCTGGATGCGCATTCCACTTGCCCGCTTTGCCGGTACCGGGTTGACCCGGAAGACATTCTCCTGGTTGGGGAGCCCAAAGTTTGGCCGCATAATAATCAAACCATTCCACCGATACAAGAGATCTCCGAAGATCCGCAGCATTGTACAACAGACATAGAGACCGGTCTCGGACCGGATTCACAGGATCGGTTCGATTCAAACTCACTTCCCCGGAGAGTCTCCGGGAGGCACTCATCCGTAGGGGAAAGAAGTGGTGGGTTCTTCAAGATTTTATTGCAGCGTCGAAACAGCATGGACGGCGAAACGACGACGAGGCTGCAGAAGAAAACGGCGCCGTTTAGGATGTCACTGGACAGTGCAATGTTGTCGACGAAGAGGAAAAGAAACGAAACCGGAAAAGAAAAAGAAAGTGGGGAGTGTGAGGGTCCAAGGAAAGACGGGTTACTGCTGACGGAGAAGGAGAAGAAACACAGATTGGAACACAGGATCATAGTGTCTCCGTCTCAAAAGTCCACTGAGATTCATGAGAGATGGAGCGACGTGCAGCCATCGGAATTACTATACCTGACGTCGGGGATGATACTGAGCGAATCGTGTTCCTCGTCTGGGAGGTCGCATTCAGGGCGGCGACAGAATATGCAGCAGCCACTGAACCGGAGCAGAGGAGCGAACCTTACGGGGGCAATAAATGAGAGAAGCTTGTCGGAAATCACGGGATTGAGCCGGAAGAGGAGAGAGGAAGGACGGCATCGTCGGGAAGAAGGAGAGAGAGAGGCGGGAGTAGTATCGAGATGGGGGGCCTGGATCTCTCAGGTGGGGCGATCTCGATCTGTACGGTAG 1383 0.517 MGGGPPSFNPFTGFSFFFFILYTTIILLAAAAASETSSSSISSTVYDDVAGKNSLEPPSLGSQRGAGERESPFKPTVAILIGVSTTLFFTTFVFLLCVKLCKPEEDAQRNSHTGGGHLGRKNSGIDRVVIESLPIFRFGSLRGQKEGLECAVCLTQFETVEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVGEPKVWPHNNQTIPPIQEISEDPQHCTTDIETGLGPDSQDRFDSNSLPRRVSGRHSSVGERSGGFFKILLQRRNSMDGETTTRLQKKTAPFRMSLDSAMLSTKRKRNETGKEKESGECEGPRKDGLLLTEKEKKHRLEHRIIVSPSQKSTEIHERWSDVQPSELLYLTSGMILSESCSSSGRSHSGRRQNMQQPLNRSRGANLTGAINERSLSEITGLSRKRREEGRHRREEGEREAGVVSRWGAWISQVGRSRSVR 460
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2533 460 SUPERFAMILY RING/U-box 128 197 - -
Acco05g2533 460 SMART ring_2 150 191 IPR001841 -
Acco05g2533 460 MobiDBLite consensus disorder prediction 418 441 - -
Acco05g2533 460 MobiDBLite consensus disorder prediction 304 326 - -
Acco05g2533 460 MobiDBLite consensus disorder prediction 232 262 - -
Acco05g2533 460 CDD RING-H2_EL5-like 149 192 - -
Acco05g2533 460 MobiDBLite consensus disorder prediction 379 442 - -
Acco05g2533 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 199 IPR013083 -
Acco05g2533 460 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 50 457 - -
Acco05g2533 460 MobiDBLite consensus disorder prediction 379 417 - -
Acco05g2533 460 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Acco05g2533 460 Pfam Ring finger domain 149 192 IPR001841 -
Acco05g2533 460 FunFam RING-H2 finger protein ATL43 125 199 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Acco05g2533 Acco-ChrAcco05 41122472 41123854 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2533 71 449 C3H Transcription Factor Family AT5G05810 43.641 2.08e-80 253