LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g2533	ATGGGTGGTGGTCCGCCTTCTTTCAATCCATTCACCGGATTTTCCTTTTTCTTCTTCATCCTCTACACCACAATCATACTCCTTGCAGCCGCTGCTGCTTCTGAAACCTCATCTTCTTCTATAAGTTCCACCGTCTATGACGACGTCGCGGGAAAAAATTCGCTAGAACCGCCATCATTGGGAAGTCAACGTGGCGCAGGGGAGAGAGAGTCTCCTTTCAAGCCCACCGTGGCCATTCTAATTGGGGTATCCACAACCCTGTTTTTCACCACCTTTGTTTTTCTTCTGTGTGTTAAACTATGTAAACCAGAGGAGGACGCCCAAAGGAATTCACATACAGGAGGTGGCCATTTGGGAAGAAAGAACTCCGGCATTGACCGGGTTGTGATCGAGTCGTTACCCATTTTCAGATTCGGATCTTTAAGGGGCCAAAAAGAGGGACTCGAATGCGCCGTCTGCCTGACTCAATTTGAGACCGTGGAGGTTCTTCGGCTGCTTCCAAAATGCAAGCACGCCTTCCATGTCGAATGCGTGGACACTTGGCTGGATGCGCATTCCACTTGCCCGCTTTGCCGGTACCGGGTTGACCCGGAAGACATTCTCCTGGTTGGGGAGCCCAAAGTTTGGCCGCATAATAATCAAACCATTCCACCGATACAAGAGATCTCCGAAGATCCGCAGCATTGTACAACAGACATAGAGACCGGTCTCGGACCGGATTCACAGGATCGGTTCGATTCAAACTCACTTCCCCGGAGAGTCTCCGGGAGGCACTCATCCGTAGGGGAAAGAAGTGGTGGGTTCTTCAAGATTTTATTGCAGCGTCGAAACAGCATGGACGGCGAAACGACGACGAGGCTGCAGAAGAAAACGGCGCCGTTTAGGATGTCACTGGACAGTGCAATGTTGTCGACGAAGAGGAAAAGAAACGAAACCGGAAAAGAAAAAGAAAGTGGGGAGTGTGAGGGTCCAAGGAAAGACGGGTTACTGCTGACGGAGAAGGAGAAGAAACACAGATTGGAACACAGGATCATAGTGTCTCCGTCTCAAAAGTCCACTGAGATTCATGAGAGATGGAGCGACGTGCAGCCATCGGAATTACTATACCTGACGTCGGGGATGATACTGAGCGAATCGTGTTCCTCGTCTGGGAGGTCGCATTCAGGGCGGCGACAGAATATGCAGCAGCCACTGAACCGGAGCAGAGGAGCGAACCTTACGGGGGCAATAAATGAGAGAAGCTTGTCGGAAATCACGGGATTGAGCCGGAAGAGGAGAGAGGAAGGACGGCATCGTCGGGAAGAAGGAGAGAGAGAGGCGGGAGTAGTATCGAGATGGGGGGCCTGGATCTCTCAGGTGGGGCGATCTCGATCTGTACGGTAG	1383	0.517	MGGGPPSFNPFTGFSFFFFILYTTIILLAAAAASETSSSSISSTVYDDVAGKNSLEPPSLGSQRGAGERESPFKPTVAILIGVSTTLFFTTFVFLLCVKLCKPEEDAQRNSHTGGGHLGRKNSGIDRVVIESLPIFRFGSLRGQKEGLECAVCLTQFETVEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVGEPKVWPHNNQTIPPIQEISEDPQHCTTDIETGLGPDSQDRFDSNSLPRRVSGRHSSVGERSGGFFKILLQRRNSMDGETTTRLQKKTAPFRMSLDSAMLSTKRKRNETGKEKESGECEGPRKDGLLLTEKEKKHRLEHRIIVSPSQKSTEIHERWSDVQPSELLYLTSGMILSESCSSSGRSHSGRRQNMQQPLNRSRGANLTGAINERSLSEITGLSRKRREEGRHRREEGEREAGVVSRWGAWISQVGRSRSVR	460

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco05g2533	460	SUPERFAMILY	RING/U-box	128	197	-	-
	Acco05g2533	460	SMART	ring_2	150	191	IPR001841	-
	Acco05g2533	460	MobiDBLite	consensus disorder prediction	418	441	-	-
	Acco05g2533	460	MobiDBLite	consensus disorder prediction	304	326	-	-
	Acco05g2533	460	MobiDBLite	consensus disorder prediction	232	262	-	-
	Acco05g2533	460	CDD	RING-H2_EL5-like	149	192	-	-
	Acco05g2533	460	MobiDBLite	consensus disorder prediction	379	442	-	-
	Acco05g2533	460	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	125	199	IPR013083	-
	Acco05g2533	460	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL42	50	457	-	-
	Acco05g2533	460	MobiDBLite	consensus disorder prediction	379	417	-	-
	Acco05g2533	460	ProSiteProfiles	Zinc finger RING-type profile.	150	192	IPR001841	-
	Acco05g2533	460	Pfam	Ring finger domain	149	192	IPR001841	-
	Acco05g2533	460	FunFam	RING-H2 finger protein ATL43	125	199	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g2533	Acco-ChrAcco05	41122472	41123854	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g2533	71	449	C3H Transcription Factor Family	AT5G05810	43.641	2.08e-80	253