Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2502 ATGGGGAGAGGGAAGATCGCGATTAGGAGAATCGATAATTCGACGAGCAGGCAGGTCACGTTCTCGAAACGAAGAAATGGTTTGCTGAAGAAGGCGAAGGAGCTCGCAATCCTGTGCGACGCAGAGGTAGGAGTTATGATATTCTCGAGCACTGGCAAGCTCTACGATTTCGCCAGCACCAGCATGAAATCAGTAACCGAACGATACAGCAAAACTAAGGAGGAACATCATCAACTGGGAAGTTCAACCACTGAAGTAAAGTTTTGGCAAAGGGAAGCAGCAATGTTGAGGCAACAATTGCATAACTTGCAAGAGAGTCACCGGAAAATAATGGGAGAAGAACTTTCAGGTTTGACTGTCAAAGATCTACTGAGTTTAGAGAGCCAGTTGGAAATTAGCCTTCGAGGTGTCCGTTTTAAAAAGGATCAACTTTTAATGGATGAAATACAGGAAATAAGTCATAAGGGAAACCTCTTACACCAAGAAAATGAGGAACTGCGAAAGAAGGTAAACCTAATTCATCAAGAAAACAAGGAATTAAAAATGAAGATCTATGGAACAAGAGATGGAAATGGAACAGACAGAAATTCTGTTCTCACAGATGGCCTAGGCATAGGAGAGAATTTGCATGTGCCAGTGAATCTCCAGCTTAGCCAGCCTCATAATCAAAACCATGAGTCGCCTTCAGGAGCCACAGAGTTGAGCAGATTGCAACTGCACTAA 723 0.4329 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASTSMKSVTERYSKTKEEHHQLGSSTTEVKFWQREAAMLRQQLHNLQESHRKIMGEELSGLTVKDLLSLESQLEISLRGVRFKKDQLLMDEIQEISHKGNLLHQENEELRKKVNLIHQENKELKMKIYGTRDGNGTDRNSVLTDGLGIGENLHVPVNLQLSQPHNQNHESPSGATELSRLQLH 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2502 240 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Acco05g2502 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco05g2502 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco05g2502 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco05g2502 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Acco05g2502 240 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Acco05g2502 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 214 - -
Acco05g2502 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco05g2502 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco05g2502 240 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Acco05g2502 240 Coils Coil 159 183 - -
Acco05g2502 240 Coils Coil 86 106 - -
Acco05g2502 240 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco05g2502 240 MobiDBLite consensus disorder prediction 219 240 - -
Acco05g2502 240 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco05g2502 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco05g2502 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2502 Acco-ChrAcco05 40756791 40765895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2502 1 233 MADS-box Gene Family AT4G37940 57.940 3.80e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco05g2502 K-box 3.3e-26 No_clan