Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2493 ATGGGATTGTCTGATTCTTCTTCTGTGGACAGCTCAGTCCTGTCCTTCTCAGATGAGACTAAAAGTAACCTAAACCTAAAAGCCACAGAGCTGAGGCTTGGCCTTCCAGGATCCCAGTCTCCTGAACGAGACTCGGATCTCTGCTTGAGAAGCTCAACTCAATTGAATGAGAAACCCTTGTTTCCACTTCGCCCATTAACTGATGATCACCACTCTTCAACAAAGACTGCTGTTTTGGGCAGCAAGAGAGGGTTCTCAGATGCCATGAATGGGTTCTCAGAGGCGAAATTTCTTGCTGATTCAGAGATCAATAATGTACTGTCCCCCAGGCCTTCCCATAACATGGGATTAAAAACTAGCTCTATGCTTGAGAATCTTGGGGCTCAAGCCAAAGCCAAAGAAGTAACACCAGTAAAGGCAACACTTGAGGGGCCTCATTCTGTCAGTGAAACTAGAGCTAACCTCGAAGGTTCTGCAAATAACAATATCAATGCACCAGCTACCAAGGCCCAGGTTGTGGGTTGGCCTCCTATAAGATCTTTTAGGAAGAATTCACTGGCTACTACTTCAAAGAATACTGAAGAAGTAGATGGAAAAGCAGGATCTAGTGCTCTGTTCATCAAAGTCAGTATGGATGGCGCTCCATACTTGAGGAAAGTAGATTTGAAGAACTACTCTGCATATCCAGAACTGTCATCTGCTCTGGAGAAGATGTTCAGCTGTTTTACCATAGGTCAATATGGCTCTCATGGAACTCTAGGCAGGGAGATTTTAAATGAAAGCAAGCTGAAGGATCTGCTTCATGGGTCTGAATATGTTCTAACCTATGAGGACAAAGATGGGGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCATTGATACATGCAGGAGACTGAGGATCATGAAGAGTTCCGATGCCATTGGTCTTGCGCCAAGGGCTGTGGAAAAAAGCAAGAGTAGGAACTAG 975 0.4503 MGLSDSSSVDSSVLSFSDETKSNLNLKATELRLGLPGSQSPERDSDLCLRSSTQLNEKPLFPLRPLTDDHHSSTKTAVLGSKRGFSDAMNGFSEAKFLADSEINNVLSPRPSHNMGLKTSSMLENLGAQAKAKEVTPVKATLEGPHSVSETRANLEGSANNNINAPATKAQVVGWPPIRSFRKNSLATTSKNTEEVDGKAGSSALFIKVSMDGAPYLRKVDLKNYSAYPELSSALEKMFSCFTIGQYGSHGTLGREILNESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLRIMKSSDAIGLAPRAVEKSKSRN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2493 324 SUPERFAMILY CAD & PB1 domains 202 305 - -
Acco05g2493 324 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 311 IPR003311 GO:0005634|GO:0006355
Acco05g2493 324 Gene3D - 199 318 - -
Acco05g2493 324 FunFam Auxin-responsive protein 199 316 - -
Acco05g2493 324 Pfam AUX/IAA family 29 315 IPR033389 -
Acco05g2493 324 ProSiteProfiles PB1 domain profile. 204 306 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2493 Acco-ChrAcco05 40665246 40667675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2493 218 306 B3 DNA Binding Superfamily AT1G19220 32.584 2.91e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco05g2493 AUX_IAA 9e-91 CL0072