Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2448 ATGGAAGCACCAGATTATTTCCAGGGCGGATTTTGCTCCCAATTCACCTCCTCCGACACCAAGACCGACCATTTCATGGTGGAGGACCTCCTCGACTTTTCTCACGACGACGACGCTATCATCACTGACACTACCTTTGACGACTCTCCTCCCACCGATTCTTCTATTCTCATTAACTCCGTCGATTGCTCCAATTCCTCTTCCTTCTCCGGACGCGACCCGAATTTCAACCCTCACATTCCCTCTCGATATTTACCCGAACCATATTTCTCCAGCGACCTCTGCGTCCCGAACGATGATATCGCAGAGCTGGAATGGCTCTCGAATATTGGGGAGGAGTCATTTTCGAGCGAGGACCTGCAGAAACTGGAGCTGATATCGGGCATAAAAGCCCGAAACGAGGAAGTATCAGAAGGCCGTGAGTTGCAGAACCACGAGGAAACCAACCGGAATGACGTCATATTCAACCGTCAAGTGTCGGTTCCGGCGAAGGCTCGCAGCAAGAGATCCCGCGGGCCCCCATGCAAGTGGACCTCTCGCCTCCTCGTAGTTTCTCCAACATCATCATCCTCTTCCGAACCCGACCTCATCCTTCCGGACCAACCCGGAAAGAAGCCGGGAAAATCGGGGAGCAGGAAAAAGGAGAACGGCGATGAAGGGTCTGGGGAGGGGCGGAAATGCCTGCATTGCGCGACGGATAAGACGCCGCAGTGGAGGACGGGGCCCTTGGGCCCGAAGACGCTGTGCAATGCGTGTGGGGTGAGGTACAAGTCGGGGAGGCTGGTGCCGGAGTACAGGCCGGCGGCGAGCCCGACGTTCGTGCTGACGAAGCACTCCAACTCGCACCGGAAGGTGCTGGAGCTGCGAAGACAGAAGGAGATAATGAGGGCCCAGCAGCAGCAGCAGCTCTTTCTGCAACAACATCAAAACATGATGTTCGATGTTTCCAACGGCGACGATTACCTGATTCACCACCACGTGGGCCCAGATATCAGGCAGGTCATTCAGTACAAAAACTGCTAG 1023 0.5523 MEAPDYFQGGFCSQFTSSDTKTDHFMVEDLLDFSHDDDAIITDTTFDDSPPTDSSILINSVDCSNSSSFSGRDPNFNPHIPSRYLPEPYFSSDLCVPNDDIAELEWLSNIGEESFSSEDLQKLELISGIKARNEEVSEGRELQNHEETNRNDVIFNRQVSVPAKARSKRSRGPPCKWTSRLLVVSPTSSSSSEPDLILPDQPGKKPGKSGSRKKENGDEGSGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEIMRAQQQQQLFLQQHQNMMFDVSNGDDYLIHHHVGPDIRQVIQYKNC 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2448 340 PIRSF Txn_fac_GATA_plant 11 316 IPR016679 GO:0003677|GO:0005634|GO:0045893
Acco05g2448 340 ProSitePatterns GATA-type zinc finger domain. 227 252 IPR000679 GO:0006355|GO:0043565
Acco05g2448 340 PANTHER GATA TRANSCRIPTION FACTOR 17 300 - -
Acco05g2448 340 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 223 285 - -
Acco05g2448 340 Gene3D - 220 271 IPR013088 GO:0006355|GO:0008270
Acco05g2448 340 MobiDBLite consensus disorder prediction 183 226 - -
Acco05g2448 340 CDD ZnF_GATA 226 273 IPR000679 GO:0006355|GO:0043565
Acco05g2448 340 SMART GATA_3 221 271 IPR000679 GO:0006355|GO:0043565
Acco05g2448 340 Pfam GATA zinc finger 227 260 IPR000679 GO:0006355|GO:0043565
Acco05g2448 340 MobiDBLite consensus disorder prediction 206 226 - -
Acco05g2448 340 ProSiteProfiles GATA-type zinc finger domain profile. 221 257 IPR000679 GO:0006355|GO:0043565
Acco05g2448 340 FunFam GATA transcription factor 217 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2448 Acco-ChrAcco05 40196603 40197909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2448 22 335 C2C2-Gata Transcription Factor Family AT5G25830 52.663 6.55e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco05g2448 GATA 1.7e-15 CL0167