Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2393 ATGAAAGATCAAGACCCTAATTATAAAGCATCAAAAACCTTGAACAAGAGTTTGCACTCCATGCAACAGAAAGAGAAGGAAGCGATTAGGAAAGAAGGGAGGGATAAGGAAATGGAAGGAAGTGGAGGAGGGACGTCAAAGGAGGAAACCCTACCTCCTGGCTTTCGATTTCATCCCACAGATGAAGAACTCATCACCAGCTATCTCATCAACAAGATCTCTGATTCAGCGTTCTCCGCTCGAGCGATCACCGACGTCGATCTCAACAAATGCGAGCCATGGGAGCTCCCTGGGAAGGCGAAGATGGGAGAGAAAGAGTGGTATTTTTTCAGTCTGAGGGATAGGAAATATCCGACGGGGGTGAGAACGAACAGAGCGACAAACACAGGCTACTGGAAGACCACCGGGAAGGACAAGGAAATCTTCAACAGTGCAACATCGGAGTTAGTTGGCATGAAAAAAACTTTGGTTTTCTACAAAGGCAGAGCCCCAAGAGGTGAAAAATCCAACTGGGTCATGCACGAATACCGTATCCACTCCAAATCCTCCTTCCGACTACACAAGCAGGATGAATGGGTGGTATGCAGAGTGTTCCAGAAGAGTGGAGGAGCCAAAAAGTACCCATCGAATAACTCAAGAGGGGTGAATCCATATAGCCTGGAAATAGGTCCTCACATGGTGGCACCTTCAATGATGCATCATGTGGCCGATCCAAATTCTGCTCACTTCCTCTACGGAAGGAACTTTGTCAACACTGCTTCTGACCTTGCAGAGGTTGCTAGGGTTTTGAGAGCCGCCGGAGGAGGGGCTGCCTCCACCACCGCTGCTTTCAACTTACCAATGCAAACCCACGCTCCGCTTAACTATCCCGCTGCAGCCGCCGGAGGATTTACCATTTCCGGCCTCAACTTGAATCTCTCAGGAGGAGGAGGAGGAACGGCAACCGCCGGGCAACCTGTTTTCCGGCAGATGAACCCTCATGATGTGGGCCCCAACATGATGACAGCTGGCAGTTCTCTGAATGTATCAGATAGTGTAGGGTATGGTGCTGCAGAAATGAGCAACCCTAATAACAATATTGGTCCGAGCAACAGGTTCATTGGGATGGACCATTGTGTGGATTTAGATAACTACTGGCCTTCCTACTAA 1149 0.4909 MKDQDPNYKASKTLNKSLHSMQQKEKEAIRKEGRDKEMEGSGGGTSKEETLPPGFRFHPTDEELITSYLINKISDSAFSARAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSATSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRLHKQDEWVVCRVFQKSGGAKKYPSNNSRGVNPYSLEIGPHMVAPSMMHHVADPNSAHFLYGRNFVNTASDLAEVARVLRAAGGGAASTTAAFNLPMQTHAPLNYPAAAAGGFTISGLNLNLSGGGGGTATAGQPVFRQMNPHDVGPNMMTAGSSLNVSDSVGYGAAEMSNPNNNIGPSNRFIGMDHCVDLDNYWPSY 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2393 382 Gene3D NAC domain 60 203 IPR036093 GO:0003677|GO:0006355
Acco05g2393 382 SUPERFAMILY NAC domain 49 200 IPR036093 GO:0003677|GO:0006355
Acco05g2393 382 ProSiteProfiles NAC domain profile. 51 200 IPR003441 GO:0003677|GO:0006355
Acco05g2393 382 FunFam NAC domain-containing protein 100-like 60 204 - -
Acco05g2393 382 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 48 228 - -
Acco05g2393 382 MobiDBLite consensus disorder prediction 19 43 - -
Acco05g2393 382 Pfam No apical meristem (NAM) protein 52 178 IPR003441 GO:0003677|GO:0006355
Acco05g2393 382 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2393 Acco-ChrAcco05 39678478 39680488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2393 47 382 NAC Transcription Factor Family AT2G24430 50.418 4.37e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco05g2393 NAM 3.2e-40 No_clan