LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g2389	ATGGAGCAAAAACCCGCCGTTTTCATGGCTCCCTGCCCTTCGACTCAATCTGTTACTGCGTCGTCCATGTACCCTGCCGGCGAAGACGACTTTCCACGGATCCCATCGGAGCTTATGGCGATCATGTCGGAAATGACAAACGGATCCGTGATCGACGAGGAAGTGAAATCGGGGGATTTCGTGTGTCAGAGTGTCAACAAAGGTTTCGCCGGCGGTGAGGATGCATACTTCGGCGCCATCAACATTGATGACCTTGACGCCGTTTTGGATCGTTGGGAGGAACTAGGAGAGAACGATATTGCTTGGGTACCCACCATCTCTCCCTCTCGTTCTCCAATTTCTACTATCACTGATCAGTCCTCAATTTCTGTTGGAAGCCCTATTTCAGCTGATAAACCAATCCAAGGAGATAATCAAGCAAGAGGAGCTTCAAGTGGTGAGCAGTCTGACGAGGACGATGAAACAGGTCCTTGTGAACAGGTCATAGATCCCACTGATAAGCGCGACAGAAGGAAGCAGTCTAATCGGTTGTCTGCAATGAGATCGAGAAGAAGAAAACAAGCGCACTTGGCTGATCTTGAGTCTCAGGTGGAGCAACTGAGTGTGGAGAATGCAACTCTATCCAAGCAGCTTGTAGATGCTGGTCATCATTTTCGTGACGCTGATACTGATAACCGAGTGCTCAAATCATATGTGGAAGCCTTGAGAGCTAAGGTGAAGTTGGCAGAAGACATAGTGGCTCGACGTGGCTCTGTAAGCACCATAAACAACCAGCTTCCCCAGCTGAACCCACATAATGTGCGGCCAATGGCGCACGTATCACCAGCCATCACTGTCAATGGAAACGATGCCTCATCATATTCTTCCGCCATTTCTCCTCTCAATTCATCTCTTACACTTGACAACTTGGATATCACCAGTAACAGTTTCAACCCCTGCTGGACTAATCTTAAGTGA	957	0.4869	MEQKPAVFMAPCPSTQSVTASSMYPAGEDDFPRIPSELMAIMSEMTNGSVIDEEVKSGDFVCQSVNKGFAGGEDAYFGAINIDDLDAVLDRWEELGENDIAWVPTISPSRSPISTITDQSSISVGSPISADKPIQGDNQARGASSGEQSDEDDETGPCEQVIDPTDKRDRRKQSNRLSAMRSRRRKQAHLADLESQVEQLSVENATLSKQLVDAGHHFRDADTDNRVLKSYVEALRAKVKLAEDIVARRGSVSTINNQLPQLNPHNVRPMAHVSPAITVNGNDASSYSSAISPLNSSLTLDNLDITSNSFNPCWTNLK	318

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco05g2389	318	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	170	185	IPR004827	GO:0003700\|GO:0006355
	Acco05g2389	318	Gene3D	-	166	218	-	-
	Acco05g2389	318	FunFam	BZIP transcription factor	165	216	-	-
	Acco05g2389	318	Coils	Coil	183	210	-	-
	Acco05g2389	318	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	165	211	IPR004827	GO:0003700\|GO:0006355
	Acco05g2389	318	MobiDBLite	consensus disorder prediction	104	128	-	-
	Acco05g2389	318	Pfam	bZIP transcription factor	165	211	IPR004827	GO:0003700\|GO:0006355
	Acco05g2389	318	MobiDBLite	consensus disorder prediction	160	176	-	-
	Acco05g2389	318	MobiDBLite	consensus disorder prediction	104	190	-	-
	Acco05g2389	318	SUPERFAMILY	Leucine zipper domain	167	211	IPR046347	GO:0003700\|GO:0006355
	Acco05g2389	318	PANTHER	BASIC LEUCINE ZIPPER 63	119	293	-	-
	Acco05g2389	318	CDD	bZIP_plant_GBF1	168	219	IPR045314	GO:0003700\|GO:0006355
	Acco05g2389	318	SMART	brlzneu	163	227	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g2389	Acco-ChrAcco05	39625633	39628872	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g2389	108	303	bZIP Transcription Factor Family	AT5G24800	47.847	5.08e-39	137

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Acco05g2389		bZIP_1	8.8e-15	CL0018