Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2371 ATGCAACAGAGGCTCAAGCTTCAGCAACAGCAAGCCCTCATGCAGCAAGCTTTGCTTCAGCAACAGCAGATGTATCACCCAGGGATGCTAGCCGCTACTATGTCCCAGATTGAGCCTATTCCAAGTGGAAATTTACCTCCAGGCTTTGACACTTCTACATGCCGCAGCATTTATGTGGGAAACATTCATGTAAATGTTACTGAACAACTTCTTGCTGAACTCTTTCAAAGTGTTGGTCCTCTCGCTGGCTGCAAGCTCATAAGGAAAGAAAAGTCCTCATATGGTTTTGTGGATTACCTAGATAGAGCATCTGCAGCCCTTGCAATAATGAATTTGCATGGACGCCAACTATATGGCCAGGCAATTAAGGTGAATTGGGCATATGCCAATACCCATAGGGAGGATACTTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAAGGTCATGTGGGATCTCAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCAGCAGGATGCTCAAAATGCCATCAATGATATGAATGGTAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGGAACAAAGGGCGCTGGTACAAGTACTATTGAGGAGAAGAACAATGACACCCAAAATGCTGTTGTCCTAACAAATGGGTCTTCAGATGGAGGTAAGGAATACCATAATGAGGATGCTCCTGAAAACAGTTCTGCCTATACCACCGTTTATGTTGGCAACCTTCCCCTTGATGTAACACAAAATGAACTCCACTATCAGTTCCATGCATTGGGGGCTGGAGTGATTGAGGAGGTCCGAGTTCAGAGGGATAAAGGTTTTGGATTTGTCAGATACAACACTCATGAAGAAGCAGAGTTGGCCATTCAGATGGCTAATGGAAGAATACTTCGTGGAAAAACAATGAAGTGTTCGTGGGGTAACAAGCCAACACCTCCTGGAACAGCTTCAAACCCATTACCTCCTCCTACACAACCTTATCAAGTCCTTGCCACTAACCAAGGCTATTCTCCAGCTGAGTTAATGGCTTATCAGCGCCAACTGGCCTTAAGTCAGGCTGCTGCATCTGGCCTTTCAGGTCAAGCTCTTGTGCATATGACTGGTCAACACGGCCTTGCTGCTGCCTCCCTTGGCTTAAACTCTGGGGCATCCCAAGCCATGTATGATGCCTATTCTGGTAATTCTTCAAGGCAGCACCTCATGTACTATCGTTAA 1296 0.4522 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAATMSQIEPIPSGNLPPGFDTSTCRSIYVGNIHVNVTEQLLAELFQSVGPLAGCKLIRKEKSSYGFVDYLDRASAALAIMNLHGRQLYGQAIKVNWAYANTHREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDLKTGRSKGYGFVSFRDQQDAQNAINDMNGKWLGNRQIRCNWGTKGAGTSTIEEKNNDTQNAVVLTNGSSDGGKEYHNEDAPENSSAYTTVYVGNLPLDVTQNELHYQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAELAIQMANGRILRGKTMKCSWGNKPTPPGTASNPLPPPTQPYQVLATNQGYSPAELMAYQRQLALSQAAASGLSGQALVHMTGQHGLAAASLGLNSGASQAMYDAYSGNSSRQHLMYYR 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2371 431 SUPERFAMILY RNA-binding domain, RBD 253 345 IPR035979 GO:0003676
Acco05g2371 431 Gene3D - 1 138 IPR012677 -
Acco05g2371 431 FunFam Nucleolysin TIAR-like protein 1 138 - -
Acco05g2371 431 Gene3D - 239 340 IPR012677 -
Acco05g2371 431 SMART rrm1_1 141 214 IPR000504 GO:0003723
Acco05g2371 431 SMART rrm1_1 56 125 IPR000504 GO:0003723
Acco05g2371 431 SMART rrm1_1 263 332 IPR000504 GO:0003723
Acco05g2371 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Acco05g2371 431 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 46 339 - -
Acco05g2371 431 FunFam Nucleolysin TIAR-like protein 139 237 - -
Acco05g2371 431 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Acco05g2371 431 Gene3D - 139 218 IPR012677 -
Acco05g2371 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Acco05g2371 431 FunFam Oligouridylate-binding protein 1C 239 340 - -
Acco05g2371 431 SUPERFAMILY RNA-binding domain, RBD 134 221 IPR035979 GO:0003676
Acco05g2371 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Acco05g2371 431 CDD RRM2_PUB1 139 218 - -
Acco05g2371 431 SMART rrm2_1 141 214 IPR003954 GO:0003676
Acco05g2371 431 SMART rrm2_1 263 332 IPR003954 GO:0003676
Acco05g2371 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Acco05g2371 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 330 IPR000504 GO:0003723
Acco05g2371 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2371 Acco-ChrAcco05 39518690 39523863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2371 107 327 Eukaryotic Initiation Factors Gene Family AT4G34110 28.319 4.49e-16 78.6