Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2354 ATGGATTCTCAACTCTCCTTTCTCTTTACTCTGCGAACAAGAATCACAAAAAGATTTAAAGTGAATAAGCTACAGATGGATGATTATTCTGGTAAACGAACCATAGAAAGGGTGGCAGTGCCTAAAAAGGGGATGGCTCATGTATTTAGAGATCCTGCTAATGCTAGGGACCGTAATGGTCAGTTTTGCAGCCGATCTGGTTGCAGCAGTAGAGTGAATTCTCCTAAGGGTACTAAATTTGCTTCATCTGAGAAAGGTAAATCTTCGAGGCCTCCAATTCAATCTTCAAGTCGTAAGGAAGCAGTTGGAAGCTCCTCTAGAACTTTACCAGGATCTTATAACCCAGGAAAATCCCCTACTGAGGCCCGGAAAACATTATCTTGCCAGTCAGAGACTGTTCCTTGTGAAACGAGTAGTTTGCAAGATGAATCAGAAATTTCTGAGCTTACACCACCACCTGGAAAAATTCGAAAAGGGCGGCCTCAAGCTGAAGTGGGAAGTTCAGAGTCTACTAATCTCATATCAATGGAAGTAGGAAGCTCTATCGTAGCATCAAAATCAACATATAGGAGGAATCTTCATCAAAAGCCTGGATTGAATGGTCAAGAGTCTAATAAAAGCTCTGGCTCAGTGACACGAGCTGGAGGTAGCAGGTATGGGTTGAGGAACCTGAGATGCAATTCTATATCTGATGTTATCCCTTCAGGCTGTTCATCATCAGATTCAACCCAGAATAGAAGGAAAGATGTGATGAAAAAGAGGAACTGTGAAGGAGAAAGTAGTTCTAGTGCTAGAGGTAAGAAGATGAGTGGGCCTTCATTGGATGGACATAATTCTGGCCCCAGAAATGGTATATCAATATCAGATTCAAGAAGATCCAGAAACTTTCCTCCTCAAAGGGATAACTACAACATTGGATCAGTTAGAACTAGAAGATCTTTCAATGGTCATGGCAGGGGAAGGCTTCCCAGCGAACCAAATGAAAACCCTGCACCACCCAATGAATCCCCTATTACCATATCATCTTTACCTCATTCCAGTAACCTTAATGCTCATGATTTATTACATCATTCCTCGTTGGAGACTCCCCTCAGAAGTCCAAGATCTTACAGTAGACCAGGTAGTAGCAGTGAGCGGTTATTTGGTGTTTTGCCCCCATCACCTTCAGAATATGGGATCACTCGTTCCCTCATGAACCGGGACAGCTTTCTACGCTTTAACATGGATGGTATTGCAGAGGTATTATTGGCACTCGAGAGGATTGAACAAGATGAAGATCTTTCACATGAGCAAATCCTGTTACTGGAGACCGACTTGTTGCTTCATGGACTAAACTTCTATGATCAACATAGAGACATGCGATTGGACATTGATAACATGTCATACGAGGAACTATTGGCTTTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCACTTTCAGAATGCCTAAAGAGAAGTTTCTACGAACCTGCCACTTCAGACGATGCATCCGAGAGCTGCGATGAGGATAAGGATGACATCAATTGCAGCATCTGCCAGGAGGAATATGTGGAAGCAGAGGAAGTGGGGAGTCTAAAATGCGAGCATAGGTATCATGTGGGATGCATACAGCAATGGCTGCGCCTCAAGAACTGGTGTCCAATTTGCAAAGCTTCTGCGGCACCATCACATTCCTCTTCTTCAACTTCAACCCCTTGA 1713 0.4355 MDSQLSFLFTLRTRITKRFKVNKLQMDDYSGKRTIERVAVPKKGMAHVFRDPANARDRNGQFCSRSGCSSRVNSPKGTKFASSEKGKSSRPPIQSSSRKEAVGSSSRTLPGSYNPGKSPTEARKTLSCQSETVPCETSSLQDESEISELTPPPGKIRKGRPQAEVGSSESTNLISMEVGSSIVASKSTYRRNLHQKPGLNGQESNKSSGSVTRAGGSRYGLRNLRCNSISDVIPSGCSSSDSTQNRRKDVMKKRNCEGESSSSARGKKMSGPSLDGHNSGPRNGISISDSRRSRNFPPQRDNYNIGSVRTRRSFNGHGRGRLPSEPNENPAPPNESPITISSLPHSSNLNAHDLLHHSSLETPLRSPRSYSRPGSSSERLFGVLPPSPSEYGITRSLMNRDSFLRFNMDGIAEVLLALERIEQDEDLSHEQILLLETDLLLHGLNFYDQHRDMRLDIDNMSYEELLALEERMGSVSTALTEEALSECLKRSFYEPATSDDASESCDEDKDDINCSICQEEYVEAEEVGSLKCEHRYHVGCIQQWLRLKNWCPICKASAAPSHSSSSTSTP 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2354 570 MobiDBLite consensus disorder prediction 230 244 - -
Acco05g2354 570 MobiDBLite consensus disorder prediction 51 172 - -
Acco05g2354 570 MobiDBLite consensus disorder prediction 276 311 - -
Acco05g2354 570 SMART ring_2 514 554 IPR001841 -
Acco05g2354 570 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 97 559 IPR045191 GO:0061630
Acco05g2354 570 MobiDBLite consensus disorder prediction 245 261 - -
Acco05g2354 570 MobiDBLite consensus disorder prediction 193 214 - -
Acco05g2354 570 MobiDBLite consensus disorder prediction 230 385 - -
Acco05g2354 570 ProSiteProfiles Zinc finger RING-type profile. 514 555 IPR001841 -
Acco05g2354 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 474 560 IPR013083 -
Acco05g2354 570 MobiDBLite consensus disorder prediction 59 146 - -
Acco05g2354 570 MobiDBLite consensus disorder prediction 193 218 - -
Acco05g2354 570 Pfam Ring finger domain 513 555 IPR001841 -
Acco05g2354 570 SUPERFAMILY RING/U-box 508 559 - -
Acco05g2354 570 MobiDBLite consensus disorder prediction 362 376 - -
Acco05g2354 570 FunFam E3 ubiquitin-protein ligase arkadia 476 560 - -
Acco05g2354 570 MobiDBLite consensus disorder prediction 334 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2354 Acco-ChrAcco05 39370333 39374170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2354 411 558 C3H Transcription Factor Family AT2G15530 44.667 5.59e-35 138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2354 05 39370333 39374170 Acco05g2354 05 39370333 39374170 ECH