Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2312 ATGCCTGTCAAATCGGCGCAATCATCGTTTCGGGATCGGACACAGGAATTTCAGAGTATAGCTGAGAGGCTAAAGAAGTCGGTGTCGTCCGGATCAGGGCCAAACGGGCCAAGCAGTAGTTCTAGATCGGAGGAACAGCGATCTGCGAACGCAATTCAGTCAGAATTCAATAGGAGGGCTTCCAAGATTGGTTATGGGATACATCAGACGTCACAGAAGCTTGCTAAGCTGGCCAAGTTGGCAAAAAGGACTTCGGTTTTTGATGACCCCACTATGGAAATCCAAGAGCTCACAGCAGTTATTAAGCAAGATGTCTCTGCATTGAACTCTGCCGTTGTGGAACTGCAGCTAATCAGCAACGCTAGAAATGACAGTGGAAATATCTCCAGTGACACTACTAGTCATTCAACCACAGTTGTGGATGACCTTAAAACCCGATTGATGAGCACCACAAAAGAGTTTAAAGAAGTCCTCACCATGCGAACAGAGAACTTGAAGGTACATGAGAATAGAAGACAGTTGTTTTCTTCCACTGCCTCTAAGGAAGCTGCGAATCCTTTTGTTCGTCAACGTCCCTTGGCTGCAAAGTCAGCTGCCAATGCCCCTGCACCCCCATGGGCTAGTGGGTCAACATCTTCAGCTCAGTTGTTTCCAAAGAAGCAAGTGGATGGGGAGGGTCAACCATTGCTGCAGCAGCAACAGCAGCAGCAGCAGCAATTGGTTCCATTGCAGGATTCATACATGCAGAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGTTGAGCAGCATTTTTAATCAATTGGCAACTCTTGTCTCCCAACAAGGGGAAATTGCCATCAGGATTGATGAGAACATGGACGATACGTTGGCAAATGTAGAAGGGGCGCAGGGGGCTTTGCTCAAATATCTGAACAGTATATCTTCTAATAGGTGGCTGATGATCAAGATATTCTTTGTATTAATATTTTTTCTCATGGTTTTCCTATTTTTTGTGGCATAA 1014 0.4566 MPVKSAQSSFRDRTQEFQSIAERLKKSVSSGSGPNGPSSSSRSEEQRSANAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDVSALNSAVVELQLISNARNDSGNISSDTTSHSTTVVDDLKTRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKEAANPFVRQRPLAAKSAANAPAPPWASGSTSSAQLFPKKQVDGEGQPLLQQQQQQQQQLVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2312 337 Pfam SNARE domain 281 333 IPR000727 -
Acco05g2312 337 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Acco05g2312 337 FunFam Syntaxin-32 like 50 300 - -
Acco05g2312 337 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484|GO:0006886|GO:0016020
Acco05g2312 337 MobiDBLite consensus disorder prediction 194 213 - -
Acco05g2312 337 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Acco05g2312 337 MobiDBLite consensus disorder prediction 21 51 - -
Acco05g2312 337 Gene3D - 48 300 - -
Acco05g2312 337 SUPERFAMILY t-snare proteins 53 300 IPR010989 GO:0016020|GO:0016192
Acco05g2312 337 SMART tSNARE_6 240 307 IPR000727 -
Acco05g2312 337 PANTHER SYNTAXIN 53 329 IPR045242 -
Acco05g2312 337 CDD SNARE_syntaxin5 248 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2312 Acco-ChrAcco05 39040641 39044582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2312 1 337 SNARE and Associated Proteins AT3G24350 65.651 5.07e-151 427