Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2305 ATGGGGGCTACTGTAGAACCCTGCAAAGAAATGGCTTTTATTTTCCTTGAATTGGCAGCTAAAGTCAGTTCTAGTTTGTTTGCGTGGAAGTCAGAAACTCTGACATTGAAGGTGGATGTTCTCTCACCAGAACTATATCTTGAAGGTCCATCCGGCACTTGCCCATTGCTGATGGAGCAGACAGGGCATTTGAACTGTAGTCAGCACGTCATTGACATATCTGGGAGTACTGATGCTTCAACATCAGCTTCATCTCATGATAGATATTTTAGTAACATAGACACCTCCGAGCATGGAGAAGGCCCTACAAATGCTGGATTCCCTGTTTCTCAGCAATCAGTTCCTCTCTCTAGTGTACCCAATGGGTCAAATTCTGGGAATTCTTCATCAGCAAGACAGGAGGAAACCCGTCAACTGAGGAATCCATTGAATTCTGGCTTTTGGATATCAATTGAGCTATTCCTCACTGTAAGCCAGATTGTTACATCTTTTATTGTTTTATCTTTGTCAAGGCATGAGCATCCAAGCACTCCATTGTTTGCATGGATTGTCGGTTATGCCAGTGGTTATATTGCTCTCCTTCCTCTGCTCTATTGGCGGTATTATCACCAGATTCAAGAGCTAGATTCATCTCATAATCAGACTTCTCAGATGAACGTTTCTTCAAGGACCTATCATTCTGTTGCTAGAACCAGTGGGCCAGAAGAAAATCAGGCTGCTGCTGCATCATTCATAAGCAATCGAGGTTCATGGTTGATGAATGCAAGACTGAAGAAACTAATGGAGTACTTCAAAATGGCCTTAGATTGTTATTTTGCTCTGTGGTTTGTTGTTGGCATCGTATGGATCTTTGGGGCACAATCGACTGCTGATGCAGCTCCTAACTTGTATAGGTTAACTATAGTGTTTCTCATCTTTAGCTGTATTGGTTATGCTATGCCCTTCCTTGTATGTGCGACAATATGTTGTTGTCTGCCTTGCATAATTTCCATTGTTGGGTTTAGAGAAGATCAGATACAAACCAGAGGGGCAACCACGGAATCCATTAATGCCTTGCCAACATACAAATTTAAAATGAAAAGTAAAAGCAATTCCAGCAACTCTGCTATTGGAGAAGGTGGGATTGTGGCTGCAGGAACTGAAAAGGAGCGTCTTATCTTTGGAGAGGATGCGGCTTGCTGCATCTGCCTGACAATGTATGAAGACAACGATGAGTTAAGAGAATTGGCTTGTCGTCATCTTTTTCACAAAGACTGTGTAGATAAGTGGCTGAAGATAAATGCATTATGCCCTCTTTGCAAGGATGAGGTTGGTGAGGTCGAGAATGCAAGAGGATCATCAGGCCAGCGGGTTGAAAATATATAG 1365 0.4256 MGATVEPCKEMAFIFLELAAKVSSSLFAWKSETLTLKVDVLSPELYLEGPSGTCPLLMEQTGHLNCSQHVIDISGSTDASTSASSHDRYFSNIDTSEHGEGPTNAGFPVSQQSVPLSSVPNGSNSGNSSSARQEETRQLRNPLNSGFWISIELFLTVSQIVTSFIVLSLSRHEHPSTPLFAWIVGYASGYIALLPLLYWRYYHQIQELDSSHNQTSQMNVSSRTYHSVARTSGPEENQAAAASFISNRGSWLMNARLKKLMEYFKMALDCYFALWFVVGIVWIFGAQSTADAAPNLYRLTIVFLIFSCIGYAMPFLVCATICCCLPCIISIVGFREDQIQTRGATTESINALPTYKFKMKSKSNSSNSAIGEGGIVAAGTEKERLIFGEDAACCICLTMYEDNDELRELACRHLFHKDCVDKWLKINALCPLCKDEVGEVENARGSSGQRVENI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2305 454 MobiDBLite consensus disorder prediction 105 137 - -
Acco05g2305 454 SUPERFAMILY RING/U-box 384 440 - -
Acco05g2305 454 Pfam Ring finger domain 392 434 IPR001841 -
Acco05g2305 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 449 IPR013083 -
Acco05g2305 454 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 58 437 - -
Acco05g2305 454 SMART ring_2 393 433 IPR001841 -
Acco05g2305 454 ProSiteProfiles Zinc finger RING-type profile. 393 434 IPR001841 -
Acco05g2305 454 MobiDBLite consensus disorder prediction 77 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2305 Acco-ChrAcco05 39000479 39004254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2305 55 443 C3H Transcription Factor Family AT1G80400 49.239 3.31e-132 385