Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2303 ATGCATGCCGCACGCACCTCTTTTCAGCTTGGATCATGGCCTGGTGGTTACTCCGTTGAGGTGCAGGGTTTTACGAGACCGTTAGCATCGTTCCTTCTCGGATTTCTGCTAGGAGCTCAAATGCTTTTCAATAATTCTCGTCATGTGCTCTTCTTAGTTCGCCCTCTTTTGCTAAGGCAGCTTCTTCCATTCTTTAGAGCTCAAAATCAACGCTTCTTTTCCTCTTCGGCGCAATCATGCCTATCAATGCCGGGTAGCTCTATCATCGATTGGCCATCACTACCGATCCCAGAACGCAACCCGAACCCGAACCTGAAATCGAATGCAGCCCCTAACTTCTCGCGGGATGACTTCTCCGTCATTGCCAATCTCTTTGTCGACCCTTCCATCTCTCAGGGTCCAGCTCTAGATATTGCGCTCGATGAGTCCGGGATTGAACCGGATCCGGCTCTGCTGCAAGCGGTATTCGATCATTTCGGTTCTTCCCCAAAGTTGCTACATTCGCTGTTCCTTTGGGCTCAGAAGCGACCAGCGTTCAGGCCAAGCGTGACGCTTTTCAACTCTATGATCAACGTTCTTGCCAAATCGAGGGAGTTTGACTCCGCTTGGATTTTGCTTCTTGAACGGATTGATCGCCACGAGGAAGGCGTTTTCGTTTCAGGGGATACTTTTGCTATAATGATCAGACGGTATGCACTTGCAGGTTTGCCACAACCTGCAATTCGAACATTCGAGTATGCTAGAAATTTAAAGCCAATTATGGATTCGGATTTAGAAATGAGGTTGTTTGAAATATTGTTGGATTCACTTTGTAAAGAAGGGTCTGTCATGGCAGCTTCAGAGTATTTCCTTCAGAGAAAGAAGATGGACCCATCTTGGGTCCCATCAGTTCGGATATATAATATCATGCTAAATGGATGGTTTCGATCAAGGAAACTCAATCATGCTGAAAGATTTTGGGCAGAGATGAAGGTGGGGAATGTAAGACCAAGCGTGGTGACTTATGGCACCCTTGTGGAAGGATATTGCCGGATGCGTCGTGTTGAAAAGGCAATTGAATTGGTTAATGATATGATCAAACAAGGAATTGAACCGAATGCAATTGTGTTTAATCCAATAATTGATGCTTTAGCAGAGGCTGGGAGATTCAAAGAGGCTTTGGGTATGCTGGAGCGCTTTCTTGGTTTAGAAACAGGCCCAACTAACTCAACTTACAATTCTTTGGTGAAGGGATTTTGTAAGGCAGGAGATCTTGTTGGTGCCAGTAAGATTCTTAAGATGATGATAAATAGGGGTTTCATCCCCAGTCCCACCACCTATAACTACTTCTTTAGGTACTTCTCAAGATTTAGGAAAGTTGATGAGGGTATGAACCTTTATATCAAGATGATTGAATCTGGTTATACCCCTGATCGGCTTACTTATCATCTTTTAGTGAAGATGCTATGTGAAGAGGGGAAATTGAACTTGGCAATTGAAGTTAGTAAGGAAATGAGGCATAAGGGATATGACATGGACCTTGCTACAAGTACTATGTTGGTTCATTTGCTGTGCAAAATGCATAGGTTGGAAGAGGCTTTTGCAGAATTTGAGGACATGATACGGAGGGGTATAGTTCCTCAGTATCTCACATTTCAGAGAATGAATAGTGCATTAAAGAAGCGAGGGATGATTGAAATGGCACGAAAACTACGCAGCTTGATGTCTTCTGTCCCTCATTCTACTAAGTTGCCAAATACATATGTTGAAGACATAGATGAAGCACATGCCCGAAGACAATCTATAATACAGAAGGCTAAAGCATTTTCTGATATGCTGAAAGACACCAAGGACCCCAGAGAACTTGCCAAATATAGAAGCTCATCAGAAGATGCTGTATCCAGCGCTGAGTGTTTGATGGATAATATTAAGAAAAGGATAAAGAAGCTATGA 1932 0.4353 MHAARTSFQLGSWPGGYSVEVQGFTRPLASFLLGFLLGAQMLFNNSRHVLFLVRPLLLRQLLPFFRAQNQRFFSSSAQSCLSMPGSSIIDWPSLPIPERNPNPNLKSNAAPNFSRDDFSVIANLFVDPSISQGPALDIALDESGIEPDPALLQAVFDHFGSSPKLLHSLFLWAQKRPAFRPSVTLFNSMINVLAKSREFDSAWILLLERIDRHEEGVFVSGDTFAIMIRRYALAGLPQPAIRTFEYARNLKPIMDSDLEMRLFEILLDSLCKEGSVMAASEYFLQRKKMDPSWVPSVRIYNIMLNGWFRSRKLNHAERFWAEMKVGNVRPSVVTYGTLVEGYCRMRRVEKAIELVNDMIKQGIEPNAIVFNPIIDALAEAGRFKEALGMLERFLGLETGPTNSTYNSLVKGFCKAGDLVGASKILKMMINRGFIPSPTTYNYFFRYFSRFRKVDEGMNLYIKMIESGYTPDRLTYHLLVKMLCEEGKLNLAIEVSKEMRHKGYDMDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFQRMNSALKKRGMIEMARKLRSLMSSVPHSTKLPNTYVEDIDEAHARRQSIIQKAKAFSDMLKDTKDPRELAKYRSSSEDAVSSAECLMDNIKKRIKKL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2303 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Acco05g2303 643 Pfam PPR repeat 467 499 IPR002885 -
Acco05g2303 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Acco05g2303 643 Pfam PPR repeat 299 325 IPR002885 -
Acco05g2303 643 Pfam PPR repeat 186 206 IPR002885 -
Acco05g2303 643 Pfam PPR repeat 510 538 IPR002885 -
Acco05g2303 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Acco05g2303 643 Pfam PPR repeat family 330 378 IPR002885 -
Acco05g2303 643 Pfam PPR repeat family 401 446 IPR002885 -
Acco05g2303 643 Gene3D Tetratricopeptide repeat domain 449 611 IPR011990 GO:0005515
Acco05g2303 643 Gene3D Tetratricopeptide repeat domain 135 260 IPR011990 GO:0005515
Acco05g2303 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Acco05g2303 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Acco05g2303 643 Gene3D Tetratricopeptide repeat domain 261 448 IPR011990 GO:0005515
Acco05g2303 643 SUPERFAMILY HCP-like 296 499 - -
Acco05g2303 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Acco05g2303 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Acco05g2303 643 PANTHER ATPASE EXPRESSION PROTEIN 3 140 498 - -
Acco05g2303 643 NCBIfam pentatricopeptide repeat 439 471 IPR002885 -
Acco05g2303 643 NCBIfam pentatricopeptide repeat 511 540 IPR002885 -
Acco05g2303 643 NCBIfam pentatricopeptide repeat 404 436 IPR002885 -
Acco05g2303 643 NCBIfam pentatricopeptide repeat 299 331 IPR002885 -
Acco05g2303 643 NCBIfam pentatricopeptide repeat 474 506 IPR002885 -
Acco05g2303 643 NCBIfam pentatricopeptide repeat 333 367 IPR002885 -
Acco05g2303 643 Coils Coil 626 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2303 Acco-ChrAcco05 38971493 38975581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2303 130 587 Glycosyltransferase AT1G05670 24.375 1.51e-40 156