Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2297 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGACGTTTACATACATGATTACTTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCCGATCCTGTCGCTATTGATGCCCCAGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGATATATTTATCGCTCGGACTAATGAGAAGCATTCAGAGGTTGCTGCATCTTATATCGAGACGCAGTTATTGAAGGGAAGGGAGCAGCAGCAACAGCAGCCACAACCCCAGCAATCACAGCAGCAGCAGCAGCACATGCAGATCCAACAGCTCCTGATGCAGAGGCATGCACAACAACAGCAGCAACAGCAGCAGCAGCAACAACAGCAACAGCAGCAGCAGCAGCAGCAGCACCAACAACAACAACAGCCCCAGCAACAGCAGCCACCACCGCAACAGCAGAGAAGGGATGGGTCTCATCTCTTAAATGGCAGTACAAATGGGATGGTTGAGAACCCAATGATGCGGCAAAACCCTGGTACTGCAAATGCACTGGCCACAAAGATGTATGAGGAGAGGTTAAAACCACCTCTTCAGAGGGATTCTTTGGATGATGCAGCAATGAAGCAAAGGTTTAGTGAGAACATGGGCCAACTCTTGGACCCAAGTCATGCCTCCATATTGAAGTCAGCTGCAGCTTCTGGCCAACCTTCAGGGCAAGTTTTGCATGGTGTTGGTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCCACAATTACCTGGGTCTGCTCCGGATATAAAGAGCGAGATAAATCCTGTTTTAAATCCTAGAGCTGCAGGTCATGAAGGGTCATTGATAGGAATTCCTGGATCGAATCAAGGTAGCAACAATTTGACGCTCAAGGGGTGGCCACTTAAAGGGTTGGATCAACTACGCTCTGGTCTTCTCCAACCGCCAAAGGCTTTTATGCAGGGCCCTCCACCTTTTCATCAACTTCATATGTTGTCGCCTCAGCATCTTATGCTTGCTCAACAAAATCTTGCATCGCCATCTGCCAGTGATGAAAATAGACGACTTAGAATGCTTTTTAATAATAGGAATATCGGCTTTAGTAAGGATGGTCTTTCAAACCCCATTGGTGATGTGGTATCAAATGTTGGGTCACCACTTCAAGCTGGCAATCTTTTGCCTCGTGGAGATACAGATATCCTAATGAAGTTAAAATTGGCTCAGTTACATCAGCATCAACAGCAGAATACCAATCCGCAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGGCTTCAAACCTTACCATGCATCAGCAAGACAAAGTGGGGGGTATTGGTAGTGTCACTGCAGATGGGAGCATGTCAAACTCTTTCAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCCGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCAAATACAACAGGCCCGTCTCCAAGTTCAGCACCATCAACCCCTTCAACTCATACTCCTGGAGATGTGATATCGATGCCTGCTGTTCCTCATAATGGTAGTTCTTCAAAGCCTCTTATGATGTTTGGCACTGATGGCGCTGGAACTCTTACATCACCTTCAAATCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGACATGGATCGATTCGTTGATGATGGATCTCTAGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATGCTGTTGGTCGTTCTATGGATATAAGCAAAGGCTTGTTCTCATTTTCCGAAGTCAATTCTGTACGAGCTAGTTCAAGCAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTCGCAAGTGGTGGCCATGACAAAAAGGCTGTCTTATGGTTCACAGATTCTCTAAAGCCAAAAGCTACTCTTGAAGAACATTCATCTTTAATAACTGATGTCCGTTTTAGTCTGAGTATGGCCCGTCTTGCAACGTCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAACCCTGGATATTCACTTCGCACCTTCACAGGACATTCTGCATCTGTTATGTCACTAGATTTTCATCCTAACAAAGATGACCTTATCTGCTCTTGTGATGGTGATGGTGAAATACGATATTGGAGCATAAATAATGGCAGCTGTACCAGAGTCTCTAAGGGTGGCACCGCCCAGATGAGGTTTCAACCGCGCATAGGGAGGTATCTTGCTGCTGCTGCAGAGAACGTTGTCTCTATTTTTGATGTGGAAACAAACACATGCCAATACTCATTACAGGGACATACAAAGCCAATACATTCTGTTTGCTGGGACCCTTCTGGGGGTTTGCTTGCATCAGTCAGTGAGGACTCTGTCAGGGTCTGGACTCTTGGATCAGGGAGTGAAGGGGAATGTGTCCATGAGCTGAGCTGTAATGGGAATAAATTTCATTCTTGTGTTTTCCACCCAACATATTTTTCGTTGCTGGTCGTTGGATGTTACCAGTCTTTGGAGCTTTGGAACATGGCTGAGCACAAGACAATGACTCTTTCGGCTCATGAAGGATTAATTGCTTCCCTGGCTGTGTCAAATGTAACTGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTAAAGCTTTGGAAGTAA 2691 0.4552 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKGREQQQQQPQPQQSQQQQQHMQIQQLLMQRHAQQQQQQQQQQQQQQQQQQQQHQQQQQPQQQQPPPQQQRRDGSHLLNGSTNGMVENPMMRQNPGTANALATKMYEERLKPPLQRDSLDDAAMKQRFSENMGQLLDPSHASILKSAAASGQPSGQVLHGVGGGMSQQVQARSPQLPGSAPDIKSEINPVLNPRAAGHEGSLIGIPGSNQGSNNLTLKGWPLKGLDQLRSGLLQPPKAFMQGPPPFHQLHMLSPQHLMLAQQNLASPSASDENRRLRMLFNNRNIGFSKDGLSNPIGDVVSNVGSPLQAGNLLPRGDTDILMKLKLAQLHQHQQQNTNPQQQLQQHALSNQQSQASNLTMHQQDKVGGIGSVTADGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPAVPHNGSSSKPLMMFGTDGAGTLTSPSNQLWDDKDLELQADMDRFVDDGSLDDNVESFLSHDDTDPRDAVGRSMDISKGLFSFSEVNSVRASSSKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKPKATLEEHSSLITDVRFSLSMARLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVSKGGTAQMRFQPRIGRYLAAAAENVVSIFDVETNTCQYSLQGHTKPIHSVCWDPSGGLLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYFSLLVVGCYQSLELWNMAEHKTMTLSAHEGLIASLAVSNVTGLVASASHDKFVKLWK 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2297 896 Pfam WD domain, G-beta repeat 693 730 IPR001680 GO:0005515
Acco05g2297 896 Pfam WD domain, G-beta repeat 611 643 IPR001680 GO:0005515
Acco05g2297 896 Pfam WD domain, G-beta repeat 774 809 IPR001680 GO:0005515
Acco05g2297 896 Pfam WD domain, G-beta repeat 861 896 IPR001680 GO:0005515
Acco05g2297 896 Pfam WD domain, G-beta repeat 649 686 IPR001680 GO:0005515
Acco05g2297 896 FunFam Transcriptional corepressor LEUNIG 740 896 - -
Acco05g2297 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 697 739 IPR001680 GO:0005515
Acco05g2297 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 864 896 IPR001680 GO:0005515
Acco05g2297 896 MobiDBLite consensus disorder prediction 135 180 - -
Acco05g2297 896 ProSitePatterns Trp-Asp (WD) repeats signature. 673 687 IPR019775 -
Acco05g2297 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 697 735 - -
Acco05g2297 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 864 896 - -
Acco05g2297 896 SMART Lish 8 40 IPR006594 GO:0005515
Acco05g2297 896 MobiDBLite consensus disorder prediction 87 112 - -
Acco05g2297 896 Pfam LisH 10 36 IPR006594 GO:0005515
Acco05g2297 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 654 689 IPR001680 GO:0005515
Acco05g2297 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 654 689 - -
Acco05g2297 896 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Acco05g2297 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 612 643 IPR001680 GO:0005515
Acco05g2297 896 Gene3D - 590 744 IPR015943 GO:0005515
Acco05g2297 896 SMART WD40_4 605 644 IPR001680 GO:0005515
Acco05g2297 896 SMART WD40_4 733 769 IPR001680 GO:0005515
Acco05g2297 896 SMART WD40_4 816 855 IPR001680 GO:0005515
Acco05g2297 896 SMART WD40_4 857 896 IPR001680 GO:0005515
Acco05g2297 896 SMART WD40_4 647 686 IPR001680 GO:0005515
Acco05g2297 896 SMART WD40_4 690 730 IPR001680 GO:0005515
Acco05g2297 896 SMART WD40_4 772 810 IPR001680 GO:0005515
Acco05g2297 896 MobiDBLite consensus disorder prediction 415 450 - -
Acco05g2297 896 Coils Coil 108 141 - -
Acco05g2297 896 CDD WD40 608 896 - -
Acco05g2297 896 Gene3D - 745 896 IPR015943 GO:0005515
Acco05g2297 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 779 819 IPR001680 GO:0005515
Acco05g2297 896 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 896 - -
Acco05g2297 896 MobiDBLite consensus disorder prediction 457 517 - -
Acco05g2297 896 MobiDBLite consensus disorder prediction 415 533 - -
Acco05g2297 896 SUPERFAMILY WD40 repeat-like 605 896 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2297 Acco-ChrAcco05 38914095 38921926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2297 691 895 Miscellaneous Gene Families AT5G08390 25.238 1.10e-11 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Acco05g2297 WD40 0.11 CL0186