LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g2267	ATGAATATTTTGTGGGAATCTTCTCCTCTCGCAGAACCAATGGGAGAGACTAAGGATGAAGGATATGAGGAAGAGCTTCTTGACTACGAAGAGGAGGAAGACAAGGCGCCCGATTCCGTTGGGACTAAAGTCAACGGTGAAGCGGCCAAGAAGGGATATGTTGGTATACACAGTTCTGGATTCCGAGACTTCCTTTTGAAGCCAGAACTCCTCCGGGCTATTGTGGACTCAGGATTTGAGCATCCATCTGAAGTTCAACATGAGTGCATCCCCCAAGCAATCCTTGGAATGGATGTATTATGTCAAGCTAAATCTGGAATGGGGAAAACTGCTGTCTTTGTTCTTTCAACTTTGCAACAAATTGATCCCGTTGCTGGCCAAGTTTCTGCCCTTGTTTTGTGTCATACAAGAGAATTGGCTTACCAGATATGTCATGAGTTCGAGAGGTTCAGCACCTACTTGCCTGACCTGAAGGTTGCTGTTTTCTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTGTTAAAAAATGAGTGCCCTCATATTGTTGTTGGCACTCCTGGAAGAATACTAGCATTAACCAGGGACAAGGACCTTTCTCTAAAGAATGTTAGACATTTCATTTTGGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGGAGAGACGTGCAAGAAATTTTCAAGATGACTCCTCATGAGAAGCAAGTCATGATGTTTTCTGCTACACTCAGCAAAGAAATTCGCCCAGTCTGCAAGAAATTTATGCAGGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACCCTTCATGGACTAGTTCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGCAAGTTGAATGATCTTCTTGATGCACTTGACTTCAATCAAGTAGTCATCTTTGTAAAAAGTGTTAGTAGAGCGGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCATTCCGGCATGTCCCAGGAGGAAAGGTTAAAGCGATACAAAGGATTCAAAGAGGGGCATGCACGGATTCTTGTCGCAACAGATCTGGTTGGAAGGGGCATTGACATTGAACGTGTCAACATAGTCATAAACTATGATATGCCTGATTCTGCAGACACATACTTGCACAGGGTTGGCAGAGCAGGAAGGTTTGGCACCAAGGGCCTCGCAATTACATTTGTTTCATGTGCTGCAGATGTTGATGTTCTCAACAATGTTCAATCAAGGTTTGAGGTGGATATAAAACAGCTTCCTGAGCAGATTGATACGTCTACATATATGCCATCATAG	1323	0.4316	MNILWESSPLAEPMGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHEKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHARILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS	440

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco05g2267	440	MobiDBLite	consensus disorder prediction	18	35	-	-
	Acco05g2267	440	Gene3D	-	55	271	IPR027417	-
	Acco05g2267	440	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	58	414	-	-
	Acco05g2267	440	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	275	436	IPR001650	-
	Acco05g2267	440	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	59	87	IPR014014	GO:0003724
	Acco05g2267	440	Pfam	DEAD/DEAH box helicase	84	249	IPR011545	GO:0003676\|GO:0005524
	Acco05g2267	440	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	128	407	IPR027417	-
	Acco05g2267	440	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	90	263	IPR014001	-
	Acco05g2267	440	Pfam	Helicase conserved C-terminal domain	289	396	IPR001650	-
	Acco05g2267	440	FunFam	DEAD-box ATP-dependent RNA helicase	272	440	-	-
	Acco05g2267	440	CDD	SF2_C_DEAD	276	405	-	-
	Acco05g2267	440	SMART	helicmild6	315	396	IPR001650	-
	Acco05g2267	440	MobiDBLite	consensus disorder prediction	1	43	-	-
	Acco05g2267	440	FunFam	DEAD-box ATP-dependent RNA helicase 56-like	47	265	-	-
	Acco05g2267	440	SMART	ultradead3	78	279	IPR014001	-
	Acco05g2267	440	CDD	DEADc_DDX39	58	265	-	-
	Acco05g2267	440	Gene3D	-	272	439	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g2267	Acco-ChrAcco05	38680019	38685559	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g2267	14	440	Eukaryotic Initiation Factors Gene Family	AT5G11200	83.156	0.0	756

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco05g2267	05	38680019	38685559	Acco10g2001	10	32613205	32617837	CCT
	Acco05g2267	05	38680019	38685559	Acco05g2267	05	38680019	38685559	ECH
	Acco10g2001	10	32613205	32617837	Acco05g2267	05	38680019	38685559	ECH