Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco05g2264 | ATGCCAAAAGCAAACAAGTTCAGAGGCGTCAGGCAGCGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCATTGCTGAAGAGACGTGTATGGCTGGGAACATTTGAGACTGCGGAGGCAGCTGCCACGGCATACGACCAAGCTGCGATATTGATGAATGGTCAAAATGCCAAGACCAATTTCCCCAGCTCAATGTATAATCACCCGCAAGACAACACTACTGCTGCTTCTTCTTTATCTCCCAAGGCTCTTTCGGACTTACTCAGCACGAAGCTTAAAAAGTGTTGCAAAGCTCCGTTGTCGTCTCCTTCCCTCACATGTCTCAGGCTTGACGCTGACAATTCTCATATTGGAGTGTGGCAGAAAGGAGCTGGGCCGCGTTCTGACTCTAACTGGGTCGTCAGGGTGGAGTTCGGCAACAAGGATCATCATCATCAGGCCAGGGATGAGTCTGATAATTCGTCGGTGACGACGTCATCATCAGTGCCGGAGAATGGTGCACCGGAGGGTAATGTGGTGGTGGATGAAGAAGACAGGCTTGCAATGCAGATGATTGAAGAGCTGCTTAACTGGAACTATACCTGCTCTTTCCCTGCTTCTCAGGAATAG | 612 | 0.5082 | MPKANKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAATAYDQAAILMNGQNAKTNFPSSMYNHPQDNTTAASSLSPKALSDLLSTKLKKCCKAPLSSPSLTCLRLDADNSHIGVWQKGAGPRSDSNWVVRVEFGNKDHHHQARDESDNSSVTTSSSVPENGAPEGNVVVDEEDRLAMQMIEELLNWNYTCSFPASQE | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco05g2264 | 203 | Pfam | AP2 domain | 6 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
| Acco05g2264 | 203 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
| Acco05g2264 | 203 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700|GO:0006355 | |
| Acco05g2264 | 203 | CDD | AP2 | 6 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
| Acco05g2264 | 203 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - | |
| Acco05g2264 | 203 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 150 | - | - | |
| Acco05g2264 | 203 | MobiDBLite | consensus disorder prediction | 153 | 167 | - | - | |
| Acco05g2264 | 203 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
| Acco05g2264 | 203 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677 | |
| Acco05g2264 | 203 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
| Acco05g2264 | 203 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
| Acco05g2264 | 203 | MobiDBLite | consensus disorder prediction | 141 | 173 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco05g2264 | Acco-ChrAcco05 | 38652785 | 38653511 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco05g2264 | 1 | 196 | AP2-EREBP Transcription Factor Family | AT5G25390 | 57.143 | 7.68e-70 | 209 |
Transcription factors information