Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2248 ATGGAGCTTCAGTTAGGTTTGGCTCTCCCAACTCAGAATCCTATCCAGGAACTCAACCTAACCTACCATGGCTTGGAGTGTTCAGAGTTGAGGAGGCCCAGTTTCTGTTTTGAAAGCCACGGGCATGTCAAAAACAAGCGTAGCTTTGAAGAGTCATTTGGACATTCTTCAAAATCGCTGCCTCTACTGGTATGGAATGGACAACCAAACGATGAAGATGACCGCCGTGGTGGGAAGAGAAACAGAAACACTCATCCGGAAAACGAGAATAACGAAGAAGAAAACCGTTTAGTGGGATGGCCGCCCATTAAATCATGGAGGAAGAAGAAAATCCATCAACGACACCGAAGATTCCCAATCAGGAACTATCGTGGGATGCTGGCTGAGAATGGAAATAGAGGATTAAACTCTTCATATGTCAAGGTTAAGATGGAAGGAGTAGCTATAGGACGAAAGATCGATTTGAGGCTTTACAGCTCTTACGAGACTCTTACGGACAAGTTATTTAGCATGTTTAATAAATGCCAGAAGCCTGAGGAAGATAAGGAAAGTTTTACACTTACATATCAAGATGAAGAAGGGGACTGGCTGGTTGCTGGAGATGTTCCCTGGCAATCCTTCATTGACTCGGTGAAACGCTTGGAGATAGTAAGGAGTGGCGTTGAAGAATCCACTTGA 678 0.444 MELQLGLALPTQNPIQELNLTYHGLECSELRRPSFCFESHGHVKNKRSFEESFGHSSKSLPLLVWNGQPNDEDDRRGGKRNRNTHPENENNEEENRLVGWPPIKSWRKKKIHQRHRRFPIRNYRGMLAENGNRGLNSSYVKVKMEGVAIGRKIDLRLYSSYETLTDKLFSMFNKCQKPEEDKESFTLTYQDEEGDWLVAGDVPWQSFIDSVKRLEIVRSGVEEST 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2248 225 Pfam AUX/IAA family 42 219 IPR033389 -
Acco05g2248 225 ProSiteProfiles PB1 domain profile. 137 224 IPR000270 GO:0005515
Acco05g2248 225 MobiDBLite consensus disorder prediction 69 94 - -
Acco05g2248 225 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 219 IPR003311 GO:0005634|GO:0006355
Acco05g2248 225 Gene3D - 133 225 - -
Acco05g2248 225 SUPERFAMILY CAD & PB1 domains 136 216 - -
Acco05g2248 225 MobiDBLite consensus disorder prediction 60 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2248 Acco-ChrAcco05 38508440 38509472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2248 127 219 B3 DNA Binding Superfamily AT3G61830 35.484 1.85e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco05g2248 AUX_IAA 6e-37 CL0072