Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2246 ATGGATGATAATAATCCCCCATCCTCTGCTGTTAGATGCAGCTTCATGCGCAAGCTTGAACCGCAAGAAGGAGCAGATCATCCAACGGCCTGTCCTAAACTGTTAGTTCTCGAACCTCAAAAGTCTCATCAACATCTTCAGAGTGAAGCTGTGTTGCAAGTCACTATTCTCAACTCCAGTTTATCTTCTTCTCAATCCGATCGCCTCGCCGCCAAGAGCGCTGTTCTTGCTCTCTTTAACCTCTGCGAGAATGGTAACCGCTTGAGACTTTTATTATATAACAGTTTGGTTTTATTAATTTTCTTTTATGGCTGGAGTGAGTCGCCCGTCGGCATACGTGTTAGAAGTTATCTCATTTTGCTAACTTTGACTTTTTCGGTTCTCATCGTGATACTCGATGTGAGGATGTTTGTTACACGCGTTATTCTTTGTTTTGGTACCGCTACTTGCTCTTTCGTGCGTCACTTTGATATTTATCTCTCTGTTGCAGAAATAGTTAGGAATAATATAGTGAACTGGGGAGCTGTTCCGGCTTTATTAAGACATCTGAAAGCACCAAAGCCAGTTAGAGAAGGTGATGGTGTTCCCAAGCCTTGCGAACATGACGTGGAAGAGAAATGTGTCCATCTCCTCGGGCTTCTTGCCATTATTAAATCGGAGAATCGACTACTCATTGTCGACGCTGGAGCTTTGCCCTGTCTTGTGGATTTGTTAAAGAGGCACAAGACCTGTGGCAATTCACGCAAATTTATAAGGAGATTAGTTACTGCCATCCAAGACCTTGCATACCCAGATAACAACGCTAAAAACCGTGTTAGGATGGAAGGTGGCATCCCTTCTCTTGTTGAATTGCTTGAATTTGATGATGCAAAGATTATTGTGCTGTACGTAGTTGTTGACATGATTCACCAATTGCAGACAGCTGAATTAGGAGCTTTTCAGGTTGGTGTGATTGGAAATCTGGTTCAATGTTCTCCAAACATAAAGAGGGAAGCTCTTCTAGCTGGTGCTCTACATCATGCAATTGGATTACTTAGGTCTCGGTGTCCCAACAGTAAAGGACAAGCAGCTTTTTTAATTGGTGTATTTGCTGCGACAGATTCTGATAGCAGGGTTCATATCGCTCAAAGAGGGGCTATTCAGCCTCTTATTGACATGCTGAAGTTTCCAAATGCACATGTTCAGGAATTGTCGTCTTTTGCTCTTGCGATGCTCTCTCAGGACACAAACAATCAAGCTGGTATAGTGCTTAATGGAGGCATAGAGCCTCTATTCAACCTTCTTTGCTTCAATAATGGTTTTATTCAACGTTCTGCATCCTTTACTTTGGAGCGTCTTGCAATGAATGAGGACAATTTTGTGGATATTGTCAAGGCTGATGGTGTTCAAAAGCCTGCTAAAGAGTGTTTAGAAAAGACAATGGATATACTAAAGGAGAAAATGCATGGACGAGTGCTAAAACAACTGTTGTATCTCATGCGTTTTGGAGAAAAGACTGTTCAAAGATGTGTGGCTTTGGCGCTTGCTCATTTATGTGCCCCTGATGATCGGAAATTTATTTTTGTTGACAACAATGTTTTCCCTGCAGGAAAACGCTTCTATGCTCACCGTAGTTGTTTAGTTGCTGCTTCTGATGTGTTTCAAGCAATGTTTGATGGGGATTACCAGGATGTTTCTGTGGAGAATGTTTCACATATGTACGAGTTATCAGAGTCATTCAACTCTATGTCGTTAAGACAAGCTTGTATACTATTTTTGTTGGAGCAATTTGAAATGTTGAGTGCCAAACCATGGTATAGCCACTTGATGTGCCGTATCATCCCAGATATACGGAAATCTTTCAGAAGCTTACTTACCATGCCTACCAAAGCAGAATGAGTCATCATTGTAGAGGCATATAAAGGAGAGGAGGACTGCCATGCTGCGTTAGGATTATTGTCTTTATCAGATTCGCCTGATGAGAGGGTTGAAGTTGGAGCTTTTGCCGCCACCTCTACAAAACTAACTAGAACAAACGGTATCCTTTATTCATAA 2034 0.4184 MDDNNPPSSAVRCSFMRKLEPQEGADHPTACPKLLVLEPQKSHQHLQSEAVLQVTILNSSLSSSQSDRLAAKSAVLALFNLCENGNRLRLLLYNSLVLLIFFYGWSESPVGIRVRSYLILLTLTFSVLIVILDVRMFVTRVILCFGTATCSFVRHFDIYLSVAEIVRNNIVNWGAVPALLRHLKAPKPVREGDGVPKPCEHDVEEKCVHLLGLLAIIKSENRLLIVDAGALPCLVDLLKRHKTCGNSRKFIRRLVTAIQDLAYPDNNAKNRVRMEGGIPSLVELLEFDDAKIIVLYVVVDMIHQLQTAELGAFQVGVIGNLVQCSPNIKREALLAGALHHAIGLLRSRCPNSKGQAAFLIGVFAATDSDSRVHIAQRGAIQPLIDMLKFPNAHVQELSSFALAMLSQDTNNQAGIVLNGGIEPLFNLLCFNNGFIQRSASFTLERLAMNEDNFVDIVKADGVQKPAKECLEKTMDILKEKMHGRVLKQLLYLMRFGEKTVQRCVALALAHLCAPDDRKFIFVDNNVFPAGKRFYAHRSCLVAASDVFQAMFDGDYQDVSVENVSHMYELSESFNSMSLRQACILFLLEQFEMLSAKPWYSHLMCRIIPDIRKSFRSLLTMPTKAEXVIIVEAYKGEEDCHAALGLLSLSDSPDERVEVGAFAATSTKLTRTNGILYS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2246 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 276 305 IPR000225 GO:0005515
Acco05g2246 677 Pfam BTB/POZ domain 530 564 IPR000210 GO:0005515
Acco05g2246 677 SUPERFAMILY ARM repeat 166 293 IPR016024 -
Acco05g2246 677 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 556 623 IPR044282 -
Acco05g2246 677 SUPERFAMILY POZ domain 521 588 IPR011333 -
Acco05g2246 677 ProSiteProfiles BTB domain profile. 522 576 IPR000210 GO:0005515
Acco05g2246 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515
Acco05g2246 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 378 420 IPR000225 GO:0005515
Acco05g2246 677 Gene3D - 314 664 IPR011989 -
Acco05g2246 677 Gene3D - 159 312 IPR011989 -
Acco05g2246 677 SUPERFAMILY ARM repeat 317 528 IPR016024 -
Acco05g2246 677 SMART arm_5 408 448 IPR000225 GO:0005515
Acco05g2246 677 SMART arm_5 163 216 IPR000225 GO:0005515
Acco05g2246 677 SMART arm_5 218 263 IPR000225 GO:0005515
Acco05g2246 677 SMART arm_5 265 307 IPR000225 GO:0005515
Acco05g2246 677 SMART arm_5 324 365 IPR000225 GO:0005515
Acco05g2246 677 SMART arm_5 367 407 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2246 Acco-ChrAcco05 38492553 38498299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2246 350 456 U-box Gene Family AT3G46510 34.579 6.76e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Acco05g2246 BTB 6.4e-05 CL0033