Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2225 ATGAGAGAAGACCAAGCCAGCAGGCTCGAATGGGTTTTGATTGCTGGACATGATGGGAAATCATTTTGCCCCAGACGTGAGAGAGTGAGTGGGACACGAGATGTGGAGACCCAATGCTCTACTGGATCCACGTTTGTTGCCACTAAATTTTTTGTTGTGGGTGAGGCAATAAAGAAGAGGGAAAGCAAATTGAACGATGAGGTCGATAACACATGCTCTCTGCTTGTGTATATATGTATGTGCCTTCGTATGGCTCATTCCTTCAATGGAATGATAACAGATTCCTTCATTAATGGTAAGCACAAGAATGCTGCGTACAGTTCAAGAACACGAGATCCATCTAGAGTGCAGCTGGCACATGGGAGGGTTGTGCTTGCAATCAGAATTTGTAGGACTTTGATATTCGGGATACCTTCGTTTTGTTTATTTGTTGCTGAACTATCAATGGGGAAGCCCACCGGTAAGAAGAAGGATCCCGAAACACTGAAGGCTGCAAATGCGAGCGGCAAGCCGAGCAAGCCCTCTGAGAGGTCTTCCAAAGCTTTTGACGAAGACACAGCAATCTTCATCAACATGTCACAGGATCTCAAGGAAGAAGGCAATAGACTCTATCAGAAAAGGGACCATGAAGGTGCTATGTTGAAGTATGAAAAGGCCCTCAAGCTCCTTCCCGGAAACCACATAGATGTGGCACACTTGCGCACCAATATGGCGGCGTGTTATATGCAGCTCGGTCTTGGAGAGTACCCTCGAGCAATTAATGAGTGCAATTTAGCTCTTGAAGTATCACCCAGATATAGCAAGGCTCTATTGAGAAGAGCAAAGTGCTATGAAGCATTGAATCGACTTGATTATGCGCTGAGAGACGTTAACTTTGTTTTGAGCGTGGAGCCTAATAATCTTAATGCATTGGAGCTTCTCGGGAGTTTGAAAAAGACCATGGAAGAAAAAGATATCACTATTGATGAGAAAGATTTGGCAAGTTTAGAGCAGCCTACCACGGCCCCCATGCGTAAAGTGGTAAGAGAAAAACTAAAGAAAAAGAAAAGTAAAAAAAGTGAGAGCAAGACACAGGACAAGGTGATTCTCGAGGATACTGCCAATGCTGTTAAAGATAAAGAAGTGGTGACAAAAACAATTGCAAAAAAGGAGGTGGTTCTGAAGCCTGTTAAAGAAGAAAAAGTAGTCACAAGGACGGTTAAGTTGGTATTTGGAGAGGATATAAGGTGGGCGCAATTGCCATTGAATTGTAGCATGAGGTTGGTGAGGGATATAATTAAGGATCGATTTCCTGGGTTGAAGGGTGTTCTTGTTAAATATAAGGATCAAGAAGGCGATTTGGTTACTATCACTACTACTGATGAATTAAGATTAGCTGAATCTTCAGGTGATGCCTTGGGTTCTCTTCGACTCTATGTCACAGAAGTCAATCCGGAGGAGGAACCAACTTATGATGGAATAACCAATGGGAATGAGATGCAAGGTGACAGTATTGAGCATGGATCAACGGAAGCAGGCAAGGATTTAGCAAATAAGCTGACTAATGTGGAGGATTGGATAATTCAATTTGCTAGGATGTTCAAGAATCATGTTGGGTTTGATTCTGATTCATACTTGGATATGCATGAGGTGTCTATGAAGCTATATTCAGAAGGCTTGGAGGATGTGGTGACAAGTGATGATGCTCAAGAGCTTTTCCAAATCGCTGCAGATAAATTTCAAGAGATGGCAGCTTTGGCATTATTTAATTGGGGCAATGTTCACATGTCCAGTGCAAGGAGACGTGTTTCCATTTCAGAGGACGGGTCAACAGAGTCTGCTTATGAGCGAATTAAAGCTGCATATGAGTGGGCAAGAAAGGAGTACAAGAAAGCAGAGAAGAGATATGAAGAAGCCTTGAAAATCAAACCAGACTTCTACGAGGGATTTCTGGCACTTGGCCATCAGCAGTTCGAGCAAGCAAAGCTCTGCTGGTATTATGCAATGGCATGCAAAATAAATTTAGAGGATGGTGCTTCCGGTGAGGTTTTACAACTATATAACAAGGCAGAGGACTGCATGGATAGAGGCATGTTGATGTGGGAGGAGATTGAAGAGCAGCGTTTAAATGGACTATCCAAATTGGACAAATATAGAGCGCATTTGGAAAAAATGGGCTTAGATGGCCTTCTCGAGGATATTTCTTCTGATGAAGCGGCAGAGCAGGCTGCAAATGTGAGGTCACAGATATATATTTTATGGGGCACCATATTGTATGAGCGTTCTGTCGTGGAATATAAGATAGGCTTACCTTCATGGGAGGAATGTTTGGAGGTTGCAGTCGAGAAGTTTGAACTAGCTGGAGCTTCTCCGACAGATATAGGAGTCATGGTAAAGAATCATTGTTCCAATCAAACAGCGCTAGAAGGTTTGGGGTTCAAAATTGGCGAGATAGTGCAGGCATGGAATGAAATGTATGATGCCCAGAGGTGGCAGTTTGGTGTACCATCATTTCGTCTTGAACCATTGTTCCGACGGCGTGTTCCCAGACTCCATCACATCTTGGAGCATTTTTGA 2556 0.4327 MREDQASRLEWVLIAGHDGKSFCPRRERVSGTRDVETQCSTGSTFVATKFFVVGEAIKKRESKLNDEVDNTCSLLVYICMCLRMAHSFNGMITDSFINGKHKNAAYSSRTRDPSRVQLAHGRVVLAIRICRTLIFGIPSFCLFVAELSMGKPTGKKKDPETLKAANASGKPSKPSERSSKAFDEDTAIFINMSQDLKEEGNRLYQKRDHEGAMLKYEKALKLLPGNHIDVAHLRTNMAACYMQLGLGEYPRAINECNLALEVSPRYSKALLRRAKCYEALNRLDYALRDVNFVLSVEPNNLNALELLGSLKKTMEEKDITIDEKDLASLEQPTTAPMRKVVREKLKKKKSKKSESKTQDKVILEDTANAVKDKEVVTKTIAKKEVVLKPVKEEKVVTRTVKLVFGEDIRWAQLPLNCSMRLVRDIIKDRFPGLKGVLVKYKDQEGDLVTITTTDELRLAESSGDALGSLRLYVTEVNPEEEPTYDGITNGNEMQGDSIEHGSTEAGKDLANKLTNVEDWIIQFARMFKNHVGFDSDSYLDMHEVSMKLYSEGLEDVVTSDDAQELFQIAADKFQEMAALALFNWGNVHMSSARRRVSISEDGSTESAYERIKAAYEWARKEYKKAEKRYEEALKIKPDFYEGFLALGHQQFEQAKLCWYYAMACKINLEDGASGEVLQLYNKAEDCMDRGMLMWEEIEEQRLNGLSKLDKYRAHLEKMGLDGLLEDISSDEAAEQAANVRSQIYILWGTILYERSVVEYKIGLPSWEECLEVAVEKFELAGASPTDIGVMVKNHCSNQTALEGLGFKIGEIVQAWNEMYDAQRWQFGVPSFRLEPLFRRRVPRLHHILEHF 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2225 851 ProSiteProfiles TPR repeat profile. 193 226 IPR019734 GO:0005515
Acco05g2225 851 Gene3D - 384 476 - -
Acco05g2225 851 Gene3D Tetratricopeptide repeat domain 191 320 IPR011990 GO:0005515
Acco05g2225 851 Gene3D Tetratricopeptide repeat domain 551 690 IPR011990 GO:0005515
Acco05g2225 851 SUPERFAMILY TPR-like 182 316 IPR011990 GO:0005515
Acco05g2225 851 Coils Coil 608 635 - -
Acco05g2225 851 MobiDBLite consensus disorder prediction 152 180 - -
Acco05g2225 851 ProSiteProfiles TPR repeat profile. 267 300 IPR019734 GO:0005515
Acco05g2225 851 CDD PB1 399 474 - -
Acco05g2225 851 PANTHER PROTEIN CLMP1 149 850 IPR044517 -
Acco05g2225 851 ProSiteProfiles PB1 domain profile. 397 476 IPR000270 GO:0005515
Acco05g2225 851 SMART tpr_5 267 300 IPR019734 GO:0005515
Acco05g2225 851 SMART tpr_5 606 639 IPR019734 GO:0005515
Acco05g2225 851 SMART tpr_5 231 266 IPR019734 GO:0005515
Acco05g2225 851 SMART tpr_5 193 226 IPR019734 GO:0005515
Acco05g2225 851 SUPERFAMILY CAD & PB1 domains 396 485 - -
Acco05g2225 851 SMART PB1_new 397 476 IPR000270 GO:0005515
Acco05g2225 851 Pfam PB1 domain 397 475 IPR000270 GO:0005515
Acco05g2225 851 SUPERFAMILY TPR-like 560 656 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2225 Acco-ChrAcco05 38283260 38288258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2225 176 300 Calmodulin-binding Proteins AT3G25230 32.117 2.88e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2225 05 38283260 38288258 Acco10g1975 10 32428753 32430994 CCT