Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2219 ATGGCGTACCACAACCACCATCTCTCTCAAGACCTACCGCTCCACCATTTCACGGGGCAATCTCATCATCATCATCATCATCATCAGCAGCAGCAGCAGCAGAACCAGGCGCTGACTGATAACTCTTTGAGAACGATATTGCAGGACCCAACCAGTAAGGCCGGCTCCGATCCCAACCAACACCACCACCCGCTTCAGACCGCTCCCAATTGGCTCAACAACGCTCTCCTCCGAACTCACTACACCGACAACAATAACGGCAACAACAGTAATACCACTGCTCCCAACAATACCAACGCCACCAATTTCCTCAACCTCCACACCGCCGCCTCCGACTCCACTGGAGCTGCTTCCCAATCCTCCAGCCAATGGCTGGCACGCCCGATCCTCAACCGGAATCATAGTGACGTAATTGACGACGTTACCGCCGGAGACTCTATCATCGCCGGTGCGACTTTGTCCCATGAGTCTGCGGATTTAAAGGCGACCGGCGACAATCTTAATAGCAAGAGCGAGGTGGTGGTGGTGGACAGTGCCGGCGCTTCTGGGGATGGTTTGATGAACTGGCAGAATGCTAGGTTCAAGGCGGAGATTCTTGCCCACCCGCTGTACGAACAGCTGCTATCGGCACATGTGGCGTGCCTGCGGATCGCCACACCGGTCGACCAGTTGCCAAGGATCGATGCTCAGCTGGCTCAGTCGCAGAATGTGGTTGCCAAGTACTCGGCGCTTGGACACGGGAGCCAGAGCATGGTTGGGGACGATAAGGAACTCGATCAGTTCATGTCTCACTATGTCTTGTTGCTTTGTTCATTCAAAGAACAACTTCAACAACATGTCAGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGGGTTTCACCAGGAGAAGGCACGGGGGCAACAATGTCAGATGATGAAGATGACCAGGTGGACAGTGATGCCAATCTGTTTGATGGTAGTTTGGATGGTTCAGACATGGGGTTTGGACCCCTTATTCCAACGGAGAATGAGAGGTCCCTCATGGAGCGCGTAAGGCAGGAATTAAAGCATGAACTCAAACAGGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTCTGCGCAAGAGACGAGCAGGGAAACTTCCCGGTGACACAACCTCTGTTCTTAAAGCTTGGTGGCAGTCACATTCCAAATGGCCTTACCCTACTGAGGAAGATAAGGCAAGGTTGGTTCAGGAAACTGGTTTGCAATTGAAGCAGATTAACAATTGGTTTATCAACCAAAGGAAGAGAAACTGGCACAGCAATCCGTCCACCTCAACGGTTCTGAAGAGCAAGCGCAAAAGGTGA 1371 0.515 MAYHNHHLSQDLPLHHFTGQSHHHHHHHQQQQQQNQALTDNSLRTILQDPTSKAGSDPNQHHHPLQTAPNWLNNALLRTHYTDNNNGNNSNTTAPNNTNATNFLNLHTAASDSTGAASQSSSQWLARPILNRNHSDVIDDVTAGDSIIAGATLSHESADLKATGDNLNSKSEVVVVDSAGASGDGLMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHGSQSMVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGSDMGFGPLIPTENERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2219 456 SMART HOX_1 381 446 IPR001356 GO:0003677
Acco05g2219 456 SMART ELK_2 359 380 IPR005539 GO:0003677
Acco05g2219 456 Gene3D - 378 450 - -
Acco05g2219 456 Pfam KNOX2 domain 252 302 IPR005541 GO:0003677|GO:0005634
Acco05g2219 456 CDD homeodomain 382 443 IPR001356 GO:0003677
Acco05g2219 456 Pfam ELK domain 359 380 IPR005539 GO:0003677
Acco05g2219 456 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Acco05g2219 456 SMART KNOX2_2 248 303 IPR005541 GO:0003677|GO:0005634
Acco05g2219 456 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Acco05g2219 456 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 441 - -
Acco05g2219 456 MobiDBLite consensus disorder prediction 302 321 - -
Acco05g2219 456 ProSiteProfiles ELK domain profile. 359 379 IPR005539 GO:0003677
Acco05g2219 456 SMART KNOX1_2 192 236 IPR005540 GO:0003677|GO:0005634
Acco05g2219 456 FunFam homeobox protein knotted-1-like 3 isoform X1 380 441 - -
Acco05g2219 456 Pfam KNOX1 domain 195 235 IPR005540 GO:0003677|GO:0005634
Acco05g2219 456 MobiDBLite consensus disorder prediction 48 67 - -
Acco05g2219 456 MobiDBLite consensus disorder prediction 16 37 - -
Acco05g2219 456 SUPERFAMILY Homeodomain-like 381 444 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2219 Acco-ChrAcco05 38249974 38253163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2219 1 456 Homeobox Transcription Factor Family AT5G25220 65.618 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Acco05g2219 KNOX2 1.3e-21 No_clan