Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2213 ATGGGCAGGCCACAACAGAGATACAGAGGCGTTCGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTATTGAAGACTAGGATCTGGCTTGGTACTTTTGAAACAGCAGAGGATGCAGCCAGAGCCTATGATGAAGCGGCTAGGCTAATGTGTGGGCCCAGAGCAAGAACCAACTTCCCTTATAACCCTAATGTGTCTCAGTCATCTTCAAAGCTTCTGTCAGCTACTTTGACTGCGAAACTCCATAGATGCTATGTGGCTTCTCTGCAGATGACTAGGCCATCATTACCAGAGCCTCAGAGAGTAGTTTTTTCACCACATACTGATGTTTCAACGAGTAACTCTGTTGAGACAGTGTTTCCGCCACGCAAGAGAGCACAAGAAGAGCAAGAAGAATCATCGGAGGCCAATTGGGTGATGAAGAAGGTGAAGGTGGAAACTAGTCAGCAATTCAAGCCTCTCGAGGAAGATCACATTGAGCAGATGATAGAGGAATTGCTTTATTATGGTTCTTTTGAACTCTGCTCTGTGTGA 546 0.467 MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNVSQSSSKLLSATLTAKLHRCYVASLQMTRPSLPEPQRVVFSPHTDVSTSNSVETVFPPRKRAQEEQEESSEANWVMKKVKVETSQQFKPLEEDHIEQMIEELLYYGSFELCSV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2213 181 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Acco05g2213 181 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Acco05g2213 181 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Acco05g2213 181 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Acco05g2213 181 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Acco05g2213 181 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Acco05g2213 181 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 132 - -
Acco05g2213 181 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Acco05g2213 181 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Acco05g2213 181 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2213 Acco-ChrAcco05 38200820 38201458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2213 1 181 AP2-EREBP Transcription Factor Family AT5G25190 66.484 3.27e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco05g2213 AP2 7.3e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2213 05 38200820 38201458 Acco10g1959 10 32359077 32360438 CCT