Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2200 ATGACGATAAAGGATCAGGGTGATGGAGGCTGTTGGCTTATGAGACTGCCGACAATGGTGTTTTTGGCTTCAAGGTCACTATTGGCTATCAAGGAAAGGCTGATGTGGCAGGAGCGTCTAATTGACCCTGGTCACTGTGGTCTGTTTTATATCCGTTTACCATCGACCGCCTCTCCTTTGTTGCTATTTTCCCAACTCCAGCTTGAGTTTCCCGCGAATTTCTGGAGCTTTGGGGTTCAGATCCGGTTCTTACTGGAAATGAGTAGTCTGGTTGAAAGGCTTCGGGTAAGATCAGATCGCAAGCCAGTTTATAATATAGATGAATCGGATGATGACGACTTTTTGCCGGGGAAACCTGGGAGAAATGAGGAAATGTTTGAGAGGATAGTTAGAAGTGATGCTAAAGAGAATTCATGCCAAGCCTGTGGAGAAAGTGAAGATCTTCTTAGTTGTGAAACTTGTACTTATGCTTTTCATCCTAAGTGCTTACTTCAACCGCTTAAAGCTCCGCTTGCTGATAATTGGAGGTGCCCTGAATGTGTTAGCCCATTGAGTGATATTGAAAAGATATTAGATTGTGAAATGCGCCCGACTGTAGTGGGTGATGGCGAGGCCTCAAAACCGGGCTCAAAGCAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTCTCATATTTGCACTGCACGTGGGTTTCAGAGAAGGAGTTTCTGAAAGCTTTCAAGTCAAACCCTCGTCTAAAGACCAAAGTGAACAATTTCCACCGTCAAATGGCATCTTCAAATACTTCTGAGGAAGACTTCGTTGCCATTCGACCTGAATGGACGACGGTTGATCGTATACTTGCTTGCAGGGGTCATGATGATGAAAAGGAATATCTTGTGAAATGGAAAGAACTTTTATACGATGAATGCTATTGGGAGTCTGAGTCTGATATTTCTGCATTTCAGCCAGAAATAGATAGATTTACAAAATTCCAGTCTAGGTCCAGGAGAAGTGCTTCTAGTAAGCAGAAAAGTAGTGGTAAGGATGGTGCTGAAGAAAAAAAGCAGCAGAAGGAATTTCAACATTATGAACATAGCCCTAGCTTTCTTTCAGGCGGCACCCTACATCCATATCAGCTTGAGGGTTTGAACTTCTTACGTTTCTCTTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGGCTAGGAAAAACCATACAAAGTATTGCCTTTTTAGCATCTCTTTTTGAAGAGAGAGTGTTTCCCCATTTAGTGGTTGCTCCCCTGTCAACTCTCCGTAATTGGGAACGTGAATTTGCAACATGGGCGCCTCATATGAATGTTGTTATGTATGTTGGATCTGCCCAAGCTCGAGCTGTTATAAGAGAGTATGAATTTTTCTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGCAAAATAGTCAGTGAGAGCAAGCAAGATAGGATCAAATTTGATGTGCTTTTGACATCATATGAAATGATCAACTTCGACTCAGCATCGTTGAAACCTATAATGTGGGAGTGCATGATAGTGGATGAAGGCCACCGACTTAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCAAGCAGACATCGTGTACTTTTAACTGGAACTCCTCTTCAGAACAATTTGGATGAACTTTTTATGCTAATGCACTTCCTTGATGCTGGGAAGTTTGGAAGCTTAGAAGAGTTCCAGGAAGAGTTTAAAGATATTAATCAGGAGGAGCAGATATCAAGGCTTCACAAAATGTTGGCTCCACACCTCCTTCGAAGAGTGAAGAAAGATGTGATGAAGGAGTTACCTCCTAAAAAGGAACTTATTTTAAGAGTTGAGTTAAGCAGCAAACAGAAAGAGTATTATAAGGCAATTCTGACACGTAATTATCAAATATTAACTCGTCGTGGTGGCGCACAGATTTCTCTTATCAATGTTGTTATGGAATTGCGCAAACTGTGTTGTCATCCTTACATGTTGGAAGGAGTTGAGCCAGATATTGAAGATCCAAAAGAAGCATATAAACAGCTACTGGAATCATCAGGGAAGTTGCAATTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACACAGAGTCCTTATATATTCACAATTTCAGCACATGCTGGACCTGCTAGAAGATTACTGTTCTTACAAGAATTGGCAGTATGAAAGGATAGATGGCAAGGTTGCTGGAGCTGAAAGACAGGTAAGGATAGATCGGTTTAACGCCAAAAACTCCTCGAGATTTTGCTTTCTTCTTTCAACCAGAGCTGGAGGATTGGGGATAAACCTTGCAACTGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACAAGAGGATCCATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATTTGGTTGTTGGAAGGCTCAAGGCTCAAAACATTAATCAGGAAGAGTTGGATGATATCATTAGGTATGGCTCAAAGGAGTTATTTGCTGATGAGAATGATGAAGCTGGCAAATCCCGCCAAATTCATTACGACGATGCTTCAATAGATAGATTGTTGGATCGTGAGCAAGTTGGAGTTGAAGAAGCTATATTGGATGATGAAGATGATGATGGATTTCTGAAGGCTTTCAAGGTGGCAAACTTTGAATATATTGATGAGGTTGAGGCTGCAGCAGAGGAGGCGAGGAAAAAAGAAAGGGAAAGTAAAAATACTGTTAAAAATTCAGATAGAGCAAATTACTGGGAGGATTTGTTGAGAGACAGATATGTAGAGCATAAAACTGAAGAGTTTAGTTCCTTAGGCAAGGGCAAGCGAAACCGCAAGCTGATGGCTTCTGTTGAGGAGGATGATCTTGCTGGCCTAGAAGATGTAAGTTCTGATGGTGAAGATGACAACTATGAAGCAGATCTTACTGATGGTGATTCAAATTCCACTGGAACTACTTCGGGGAGAAGACCTTACAGAAAGAAAGCCCGTGCAGATAGTGCAGAGCCACTTCCTTTGATGGAAGGTGAAGGAAGATCATTCAGAGTACTTGGTTTCAATCAAAGCCAGAGGGCTCAATTTGTGCAAATTTTGATGAGGTTTGGAGTTGGTGACTATGATTGGAAGGAGTTTACTCCCCGCTTGAAACAGAAGACATATGAAGAAATCAAAGATTATGGAGTCCTTTTCTTGTCTCATATCGCTGAAGATATATCTGATTCTCCTACATTCTCAGACGGTGTTCCAAAAGAAGGACTTAGAATACATGATGTACTAGTTAGGATTGCTGTTCTTCTCTTGATAAGAGAGAAAGTGAAGTTTGCATCAGAAAAGGATCCTGGAACTCTCCTTTACACTGATGACATCTTGTTGCGGTATCCTGGTTTGAAGGGTGGAAAGATATGGAAGGAGGAGCATGATATAGTGTTACTACGTGCTGTGTTGAAGCATGGATATGGAAGGTGGCAAGCAATTGTGGATGACAAGGATCTAAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCATAATAAATTTACCAGTACCTGGACAAGTTGGTACCCAGGCACAAAATGGTGCAAATTCAACAAATGTAGAAGCAATGCCCAACCAATCTGGGGAAAATGGTGGGAATGAGACGGTAGCTGATGGTGTGCCTGGTTCTGGTGATGCTAGGAACCAAACACCGTTATATCAAGAGTCTTCAATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTGTAAAAAAGAGGGTTCTTCTGTTGGAAAAAGGTCTCTATGCTGAGTACCAGAAAGAATACTTTGGTGATCATAATACAAATGAAGCCATGAATGTAGAATTTAAAAATGAACCAAAGGATTCAAATGTTCCAAGTTATAAATCAGGGGAGATTGACAAAAAAATGATCGATCAACTGCCTCAATTAGAAGAAATAGCTTCTGAAGAATTTTCTGCTGCCTCTTGTGATAGTGACCCAAATCGATCAGAATTGGTTCGACTTTACAATGAGATATGCAGGGTTGCAGAGGAAAACACCATTGAATTGGCTGGAGGACCAGCAGATGTCGGCCCAATGAAGAACTTGCCTCCCCTAGAAACTGTTTGTGAAGACATCAATAAAATTCTATCACCCACTAAGCAAGATGATGGCACCGCGGAAATGCCAATACCGAGTCCAGGTATCAAAGCAGAGGCTTTATCAGAGAGTGAAGTTGCTGGCTCCAAATTGCCCTCAACTCCACAAGACGACAGCAAACCTGATAATGCAGTAAACAAGGAGGGAAAAGATGTGGCGATAGGGTCCGATAACGGAAAAGAAATCAGATCAGAGACGATGGGAGGTGATGTTGAAATGGGCGAAGCTAACAATGATGCTGAATTGGATGAAAACATGGACAAACCTGATCCTGTGGTCTAG 4536 0.4107 MTIKDQGDGGCWLMRLPTMVFLASRSLLAIKERLMWQERLIDPGHCGLFYIRLPSTASPLLLFSQLQLEFPANFWSFGVQIRFLLEMSSLVERLRVRSDRKPVYNIDESDDDDFLPGKPGRNEEMFERIVRSDAKENSCQACGESEDLLSCETCTYAFHPKCLLQPLKAPLADNWRCPECVSPLSDIEKILDCEMRPTVVGDGEASKPGSKQIFVKQYLVKWKGLSYLHCTWVSEKEFLKAFKSNPRLKTKVNNFHRQMASSNTSEEDFVAIRPEWTTVDRILACRGHDDEKEYLVKWKELLYDECYWESESDISAFQPEIDRFTKFQSRSRRSASSKQKSSGKDGAEEKKQQKEFQHYEHSPSFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEERVFPHLVVAPLSTLRNWEREFATWAPHMNVVMYVGSAQARAVIREYEFFFPKKQKKIKKKKSGKIVSESKQDRIKFDVLLTSYEMINFDSASLKPIMWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDPKEAYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVAGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDASIDRLLDREQVGVEEAILDDEDDDGFLKAFKVANFEYIDEVEAAAEEARKKERESKNTVKNSDRANYWEDLLRDRYVEHKTEEFSSLGKGKRNRKLMASVEEDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGTTSGRRPYRKKARADSAEPLPLMEGEGRSFRVLGFNQSQRAQFVQILMRFGVGDYDWKEFTPRLKQKTYEEIKDYGVLFLSHIAEDISDSPTFSDGVPKEGLRIHDVLVRIAVLLLIREKVKFASEKDPGTLLYTDDILLRYPGLKGGKIWKEEHDIVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPIINLPVPGQVGTQAQNGANSTNVEAMPNQSGENGGNETVADGVPGSGDARNQTPLYQESSILYHFRDMQRRQVEFVKKRVLLLEKGLYAEYQKEYFGDHNTNEAMNVEFKNEPKDSNVPSYKSGEIDKKMIDQLPQLEEIASEEFSAASCDSDPNRSELVRLYNEICRVAEENTIELAGGPADVGPMKNLPPLETVCEDINKILSPTKQDDGTAEMPIPSPGIKAEALSESEVAGSKLPSTPQDDSKPDNAVNKEGKDVAIGSDNGKEIRSETMGGDVEMGEANNDAELDENMDKPDPVV 1511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2200 1511 Gene3D - 1123 1258 - -
Acco05g2200 1511 ProSiteProfiles Zinc finger PHD-type profile. 136 183 IPR019787 -
Acco05g2200 1511 CDD CD2_tandem 275 324 - -
Acco05g2200 1511 SMART DUF1086_2 997 1157 IPR009462 GO:0003677|GO:0006338
Acco05g2200 1511 SUPERFAMILY Chromo domain-like 151 261 IPR016197 -
Acco05g2200 1511 Pfam PHD-finger 139 181 IPR019787 -
Acco05g2200 1511 Pfam Chromo (CHRromatin Organisation MOdifier) domain 278 326 IPR023780 -
Acco05g2200 1511 Pfam Chromo (CHRromatin Organisation MOdifier) domain 187 241 IPR023780 -
Acco05g2200 1511 SUPERFAMILY Chromo domain-like 266 329 IPR016197 -
Acco05g2200 1511 SMART chromo_7 184 260 IPR000953 -
Acco05g2200 1511 SMART chromo_7 275 329 IPR000953 -
Acco05g2200 1511 Pfam CHD subfamily II, SANT-like domain 1020 1146 IPR009462 GO:0003677|GO:0006338
Acco05g2200 1511 Gene3D - 263 326 - -
Acco05g2200 1511 SMART helicmild6 723 807 IPR001650 -
Acco05g2200 1511 Pfam SNF2-related domain 391 671 IPR000330 GO:0005524|GO:0140658
Acco05g2200 1511 MobiDBLite consensus disorder prediction 1224 1262 - -
Acco05g2200 1511 CDD CD1_tandem 187 257 - -
Acco05g2200 1511 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 697 858 IPR001650 -
Acco05g2200 1511 MobiDBLite consensus disorder prediction 1224 1247 - -
Acco05g2200 1511 MobiDBLite consensus disorder prediction 338 354 - -
Acco05g2200 1511 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 132 1417 - -
Acco05g2200 1511 MobiDBLite consensus disorder prediction 990 1038 - -
Acco05g2200 1511 Gene3D - 614 838 IPR027417 -
Acco05g2200 1511 Gene3D - 185 260 - -
Acco05g2200 1511 ProSiteProfiles Chromo and chromo shadow domain profile. 185 267 IPR000953 -
Acco05g2200 1511 MobiDBLite consensus disorder prediction 990 1009 - -
Acco05g2200 1511 SMART PHD_3 138 181 IPR001965 -
Acco05g2200 1511 SMART DUF1087_2 927 992 IPR009463 -
Acco05g2200 1511 MobiDBLite consensus disorder prediction 1459 1486 - -
Acco05g2200 1511 MobiDBLite consensus disorder prediction 328 354 - -
Acco05g2200 1511 Gene3D - 363 613 IPR038718 -
Acco05g2200 1511 Pfam CHD subfamily II, DUF1087 928 989 IPR009463 -
Acco05g2200 1511 Coils Coil 919 946 - -
Acco05g2200 1511 Pfam Helicase conserved C-terminal domain 694 807 IPR001650 -
Acco05g2200 1511 MobiDBLite consensus disorder prediction 1417 1511 - -
Acco05g2200 1511 SMART ultradead3 367 580 IPR014001 -
Acco05g2200 1511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 862 IPR027417 -
Acco05g2200 1511 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 383 569 IPR014001 -
Acco05g2200 1511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 184 IPR013083 -
Acco05g2200 1511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 604 IPR027417 -
Acco05g2200 1511 CDD SF2_C_SNF 692 818 - -
Acco05g2200 1511 ProSitePatterns Zinc finger PHD-type signature. 139 180 IPR019786 -
Acco05g2200 1511 ProSiteProfiles Chromo and chromo shadow domain profile. 277 336 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2200 Acco-ChrAcco05 38061662 38083001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2200 393 868 RAD5 or RAD16-like Gene Family AT1G02670 22.662 3.41e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco05g2200 SNF2_N 4.4e-66 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2200 05 38061662 38083001 Acco10g1950 10 32297459 32312704 CCT