LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g2141	ATGGCTGATTCCGACCACACTCTGAGAACTAACAGCGACTCCTGCAAGTACAAGGGCGTCAGAAAGAGAAAATGGGGCAAATGGGTGTCCGAAATCAGACTTCCCAATAGCCGCGAGCGCATTTGGCTTGGCTCCTATGATTCGCCGGAGAAGGCCGCTCGAGCATTCGACGCCGCCCTATACTGCCTCCGCGGCCCAAATGCCAGCTTCAACTTCCCTGACACGCCTTTGGAGTTGGACAATATCACTGTCTCTGGTGATCATCATCGCCAATCTCGTTCTCCTCGAGAAATCCAAGAGCTTGCTACTAGGTTTGCCAACGAATACCAGCGGGACCCACCAATAATGGTTCAGCAATCTTCAGAAACAGCGGCTCCTTCTTCCTGCGAATCAGATGGGGTTGCTGAGAGTGGTAATCCTGTGGAGGTGGACAACGGGGTCGGGGACATAAGGGGCATTAACGACTGGTCGTTTTTGAAGTCTTTGGATGAGATTGACACAGCCAATAATGGTAACCATAATTATAATGGTTTCTACTCTGGATTCGACAAGATGCACTCTGGTGAGTTGTTGTTTCCCACATCACCGCCTCATTTGCTCGTTGATTATCATGTTAGTGACAATAATGGGCACGCTATGGAATGCGATGACGCCTTTTCCCAACCATCATTGTTCCTTTGGAACTTTTGA	690	0.4942	MADSDHTLRTNSDSCKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGPNASFNFPDTPLELDNITVSGDHHRQSRSPREIQELATRFANEYQRDPPIMVQQSSETAAPSSCESDGVAESGNPVEVDNGVGDIRGINDWSFLKSLDEIDTANNGNHNYNGFYSGFDKMHSGELLFPTSPPHLLVDYHVSDNNGHAMECDDAFSQPSLFLWNF	229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco05g2141	229	SMART	rav1_2	16	79	IPR001471	GO:0003700\|GO:0006355
	Acco05g2141	229	FunFam	Ethylene-responsive transcription factor 2	15	74	-	-
	Acco05g2141	229	CDD	AP2	15	75	IPR001471	GO:0003700\|GO:0006355
	Acco05g2141	229	PRINTS	Ethylene responsive element binding protein signature	17	28	IPR001471	GO:0003700\|GO:0006355
	Acco05g2141	229	PRINTS	Ethylene responsive element binding protein signature	39	55	IPR001471	GO:0003700\|GO:0006355
	Acco05g2141	229	MobiDBLite	consensus disorder prediction	117	134	-	-
	Acco05g2141	229	ProSiteProfiles	AP2/ERF domain profile.	16	73	IPR001471	GO:0003700\|GO:0006355
	Acco05g2141	229	MobiDBLite	consensus disorder prediction	117	146	-	-
	Acco05g2141	229	Gene3D	AP2/ERF domain	15	74	IPR036955	GO:0003700\|GO:0006355
	Acco05g2141	229	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	12	144	-	-
	Acco05g2141	229	Pfam	AP2 domain	15	65	IPR001471	GO:0003700\|GO:0006355
	Acco05g2141	229	SUPERFAMILY	DNA-binding domain	16	74	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g2141	Acco-ChrAcco05	37591256	37591945	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g2141	10	229	AP2-EREBP Transcription Factor Family	AT1G19210	42.731	5.28e-42	139

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco05g2141		AP2	3.6e-13	CL0081