Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2121 ATGGGGAGGAGTCCATGTTGCTCCAAGGAAGGAGTGAACAGGGGAGCCTGGACTGCCCATGAGGACAAGTTACTCATCTCTTACGTTCAAGCCCATGGCGAAGGCAAATGGCGAAACCTCCCCCACCGAGCTGGCCTGAAAAGATGTGGCAAAAGCTGTAGGCTTCGCTGGCTAAACTATCTCAGGCCTAATATTAAGCGAGGCAACATCACTCACGATGAAGAAGATCTCATTATCAGGCTCCATAAACTTCTTGGTAACAGATGGGCTCTTATAGCTGGAAGGTTACCTGGGAGAACAGACAATGAAATCAAGAACTACTGGAACACTACTCTGGCCAAGAAACTCCGATACTTGGAATTAACAACAGGCAAGCAAGTGGCTGACGATCCTCATCAGCCACAACCACAGTTAATTCAGACCAAGCCCAGTCGGTGTAAGAACCTAGTTATCCTACCGCCGCAACACCCAGATGAAAACTCCAACATCAACTCTTGTGCTTCAAACCAGATAGAGGCTGATGCAGCTCCGATAGCCACAAATCAATCTGTGCAGGGTTCACGTTTTCCGAAATCTCAATTTAATGCAGACGAAGAGGGGGTTCATGAAAATCATAATTCGGATATGAACATGGGGGGTTCTGGGAGCGAGGATCAGTTTTGCCTGAGTGCAAAAATTTTGTACGGAGAAACCGGGAACTTTAACCTCGACCCGCCCCTATCCGTTGACCAACTTATGGGCAATGGCTGGGCCCCGACAACAGATGGCTTCGATGTCCCCGAGGATAATGTCGCTATGGATTTGGAATCACTGTCCCTCCTGCTCGACTATGGGGATTGGCCCTGA 846 0.4894 MGRSPCCSKEGVNRGAWTAHEDKLLISYVQAHGEGKWRNLPHRAGLKRCGKSCRLRWLNYLRPNIKRGNITHDEEDLIIRLHKLLGNRWALIAGRLPGRTDNEIKNYWNTTLAKKLRYLELTTGKQVADDPHQPQPQLIQTKPSRCKNLVILPPQHPDENSNINSCASNQIEADAAPIATNQSVQGSRFPKSQFNADEEGVHENHNSDMNMGGSGSEDQFCLSAKILYGETGNFNLDPPLSVDQLMGNGWAPTTDGFDVPEDNVAMDLESLSLLLDYGDWP 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2121 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Acco05g2121 281 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco05g2121 281 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Acco05g2121 281 CDD SANT 16 61 IPR001005 -
Acco05g2121 281 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Acco05g2121 281 FunFam MYB-related transcription factor 13 66 - -
Acco05g2121 281 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 194 - -
Acco05g2121 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Acco05g2121 281 SMART sant 66 114 IPR001005 -
Acco05g2121 281 SMART sant 13 63 IPR001005 -
Acco05g2121 281 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Acco05g2121 281 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Acco05g2121 281 CDD SANT 71 112 IPR001005 -
Acco05g2121 281 Gene3D - 70 138 - -
Acco05g2121 281 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2121 Acco-ChrAcco05 37433619 37434804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2121 1 116 MYB Transcription Factor Family AT2G16720 72.414 6.59e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco05g2121 Myb_DNA-binding 5e-15 CL0123