Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2118 ATGAGGAGGAGTTCAAGTTGTCCTGGAAAAGTAGAAGGACTGAACAGAGGAGCATGGACGGCTCAAGAGGACAAGCTGCTTACTTCTTACATTATGCTCTACGGCGAAGGCAAGTGGAGCCACGTCCCTATAAGAGCTGGCTTAAATAGGAGTGGCAAAAGCTGTAGGCTTCGATGGCTCAACTATCTCAGGCCTGATATCAAGAGAGGCAACATCACCCAAGACGAAGAAGACCTCATTATTAGACTTCATAAACTTCTTGGTAACAGATGGTCTCTTATAGCTGGAAGGCTACCTGGAAGAACAGACAATGAGATCAAGAACTACTGGAACACTACTTTGGGAAGGAAGCTTAGAACGCAATCAGGCGCAACGACGTCATCTCGACGACATGCGTCCACCAAATCAAGCGAGTCTAATAATGATATGACTCGACCACTACAAGTGATCCAAAAGGCCGTTAGATGCAAAAACGTGGTTATCCAACATCCACCACCTAATTGTCCTGAAGAAACGACGTCGTTCACCGTCAACTCTCTAGCTTCTTCCGACCAGTTAGGGTTTGATGAAGCCCACCTAGCTCCCCAGTTGTTGGACCAGTTTCTGGAGGCCGATATACATGAATATTTGAACTTGTCGGGCCCTGAACGTAATGATGAGTTACTTGGTGAACTGAATGGAATAGATTTTTTCAGAGAGCTTGACAATAGCATGCCCATGGCCATGAATGCTCAAGCAGACGAGTTCTCACCAATCGACAAACTTATTGGCAATTGTGGGACAGCTGATGGATTCAGGAACATTGGCTCTATGGATCTGGATTTAATGACATTCATGCTGGATTAA 846 0.4551 MRRSSSCPGKVEGLNRGAWTAQEDKLLTSYIMLYGEGKWSHVPIRAGLNRSGKSCRLRWLNYLRPDIKRGNITQDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLGRKLRTQSGATTSSRRHASTKSSESNNDMTRPLQVIQKAVRCKNVVIQHPPPNCPEETTSFTVNSLASSDQLGFDEAHLAPQLLDQFLEADIHEYLNLSGPERNDELLGELNGIDFFRELDNSMPMAMNAQADEFSPIDKLIGNCGTADGFRNIGSMDLDLMTFMLD 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2118 281 Gene3D - 9 69 - -
Acco05g2118 281 MobiDBLite consensus disorder prediction 120 145 - -
Acco05g2118 281 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Acco05g2118 281 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Acco05g2118 281 CDD SANT 73 114 IPR001005 -
Acco05g2118 281 FunFam Transcription factor TT2 72 143 - -
Acco05g2118 281 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 151 - -
Acco05g2118 281 FunFam Myb transcription factor 16 68 - -
Acco05g2118 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 63 IPR017930 -
Acco05g2118 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Acco05g2118 281 CDD SANT 18 63 IPR001005 -
Acco05g2118 281 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Acco05g2118 281 Gene3D - 71 145 - -
Acco05g2118 281 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Acco05g2118 281 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Acco05g2118 281 SMART sant 15 65 IPR001005 -
Acco05g2118 281 SMART sant 68 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2118 Acco-ChrAcco05 37385947 37387027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2118 2 121 MYB Transcription Factor Family AT3G13540 65.833 7.32e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco05g2118 Myb_DNA-binding 1.1e-14 CL0123