Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2117 ATGGGTTGGGGTCACCTGGGAAGAACGGAGCAATCCAACTCGGGTGAGCCGAGTACCAGTGCGGAGGCTGCTCCCACCAACACCGAACAATCCGTACCTCGGCGATTTCCTCCGGCGGCGCAGCCTGAGATCATGAGAGCGGCTGAGAAGGATGATCAGTATGCCTCTTTCGTCTATGAAGCCTGTCGCGATGCCTTCCGTCACCTCTTTGGTACTAGAGTTGCAGTTACCTACCAAAGTGAGACAAAACTATTGGGACAGATGCTTTACTATGTGATGACAACAGGTTCAGGACAACAGACGCTCGGAGAGGAATACTGTGATATCACTCAGGTTGGAGGACCTTATGGACTTCCTCCTACTCCTGCAAGGCGTGCTCTTTTCATTGTATACCAGACAGCTGTTCCATATATTGCAGAAAGAATAAGTTCTAGAATTGCTTCCCGAGGAATTGCACTTGCTGATTCACAATCTGCTGAGATCTATGGTGAAAGTGGTACCACCATTATTAGGAGTAGTGAACTTCAAACTTCTGATGTGAGTGAACTTCCCTCTTCTTCATCAGGGCAATCTCTTACAACTCTGACAAGGTTGAAGGAGAAATTGAGAGGATCTTGGTTGCGTGTAGTTCAGAGATGGCCTACGATGCTTCCTATGGTTCGTGAGTTGTTGCAACTGGTTCTCCGTGCTAACCTTATGTTCTTCTATTTTGAAGGTCTCTATTATCATATATCAAAACGTGCTGCAGGAATTCGATATGTCTTCATTGGAAAATCATCAAATCAAAGGCCCAGATACCAGATTCTTGGTGTATTTCTATTGATTCAGCTTTGTATAATTGCTGCTGAAGGGCTACGTCGAAGCAATTTATCTTCAATTGCAAGTTCAGCTCATCAGACATCCTTTGGGACGCATCAGAGATCAGCAGGACGTGGTTTGCCTGTTTTAAATGAAGAGGGTCTTCCAGCATCGTCAGATACAGACAAAGGAAATTGGTTATCTGGCGCCACACATTCTGAGTCCCAAGCAACTAGTGGAGCGAGCAAATGCACCCTCTGCCTTAGTAATCGGCAACACCCAACAGCTACTCCCTGTGGCCATGTATTTTGCTGGAACTGTATAACGGAATGGTGCAACGAAAAGCCAGAATGCCCTCTTTGCCGCACCCCCTTGACACACTCAAGTCTAGTGTGCCTGTATCACTCAGACTTCTAG 1215 0.4658 MGWGHLGRTEQSNSGEPSTSAEAAPTNTEQSVPRRFPPAAQPEIMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVTYQSETKLLGQMLYYVMTTGSGQQTLGEEYCDITQVGGPYGLPPTPARRALFIVYQTAVPYIAERISSRIASRGIALADSQSAEIYGESGTTIIRSSELQTSDVSELPSSSSGQSLTTLTRLKEKLRGSWLRVVQRWPTMLPMVRELLQLVLRANLMFFYFEGLYYHISKRAAGIRYVFIGKSSNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSIASSAHQTSFGTHQRSAGRGLPVLNEEGLPASSDTDKGNWLSGATHSESQATSGASKCTLCLSNRQHPTATPCGHVFCWNCITEWCNEKPECPLCRTPLTHSSLVCLYHSDF 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2117 404 MobiDBLite consensus disorder prediction 1 37 - -
Acco05g2117 404 CDD RING-HC_PEX10 348 399 - -
Acco05g2117 404 MobiDBLite consensus disorder prediction 7 34 - -
Acco05g2117 404 SMART ring_2 350 387 IPR001841 -
Acco05g2117 404 SUPERFAMILY RING/U-box 349 393 - -
Acco05g2117 404 FunFam Peroxisome biogenesis factor 10 325 401 - -
Acco05g2117 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 329 401 IPR013083 -
Acco05g2117 404 ProSitePatterns Zinc finger RING-type signature. 365 374 IPR017907 -
Acco05g2117 404 Pfam Pex2 / Pex12 amino terminal region 51 287 IPR006845 -
Acco05g2117 404 Pfam Zinc finger, C3HC4 type (RING finger) 348 392 - -
Acco05g2117 404 ProSiteProfiles Zinc finger RING-type profile. 350 388 IPR001841 -
Acco05g2117 404 MobiDBLite consensus disorder prediction 320 340 - -
Acco05g2117 404 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 37 402 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2117 Acco-ChrAcco05 37378349 37382146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2117 345 400 C3H Transcription Factor Family AT4G27470 37.879 9.14e-10 57.0