Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2109 ATGGACGGAGGTGCTCCCTATAATCCTCGCACGGTCGAGGAGGTCTTCAGGGATTTCAAAGGTCGCCGGGCTGGTATGATTAAGGCCCTTACCACCGATGTTGAAGAGTTCTATCAGCAGTGTGATCCTGAGAAGGAGAACCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTGCCAGCCGAGGAGGTGCCTCCAGAGCTTCCAGAACCTGCACTGGGTATCAACTTTGCCAGAGATGGAATGCAAGAAAAAGACTGGCTATCTTTGGTTGCTGTTCACAGTGATGCGTGGCTACTTGCCGTAGCCTTTTATTTTGGTGCAAGATTTGGATTTGATAAGGCTGATAGGAAGCGATTGTTTAATATGATCAATGATCTTCCAACAATATTTGAGATTGTTACGGGGATGGCCAAGAAACAAGGAAAGGAGAAGTCATCAATTTCTAACCATAGCAGTAACAAATCCAAATCAAACTCTAAGCAAACGCAGAGAGGATCTGAATCTCAAGGAAAGTATTTAAAAGCAATGCAATCAAAAGATGAAGATGAGGAGGGTTTGGATGAAGAAGACGAGGAGGAGCATGGAGAGACACTATGTGGGGCATGTGGAGAGAACTACGCAGCTGACGAGTTCTGGATTTGCTGTGACATTTGTGAAAAGTGGTTTCATGGGAAGTGTGTGAAGATCACCCCTGCAAGGGCTGAACATATCAAGCAGTACAAATGTCCTTCCTGCAGCAACAAGAGAGCTCGACCTTGA 771 0.4565 MDGGAPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEIVTGMAKKQGKEKSSISNHSSNKSKSNSKQTQRGSESQGKYLKAMQSKDEDEEGLDEEDEEEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2109 256 SUPERFAMILY FYVE/PHD zinc finger 192 253 IPR011011 -
Acco05g2109 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 251 IPR013083 -
Acco05g2109 256 PANTHER CPG BINDING PROTEIN 8 255 IPR045104 GO:0006355|GO:0042393
Acco05g2109 256 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Acco05g2109 256 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Acco05g2109 256 MobiDBLite consensus disorder prediction 145 196 - -
Acco05g2109 256 MobiDBLite consensus disorder prediction 150 177 - -
Acco05g2109 256 FunFam PHD finger alfin-like protein 195 251 - -
Acco05g2109 256 CDD PHD_AL_plant 202 252 IPR044104 -
Acco05g2109 256 Pfam PHD-finger 203 252 IPR019787 -
Acco05g2109 256 SMART PHD_3 202 250 IPR001965 -
Acco05g2109 256 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2109 Acco-ChrAcco05 37295093 37298529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2109 1 255 Alfin-like Transcription Factor Family AT3G42790 77.344 5.13e-128 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Acco05g2109 Alfin 7e-70 No_clan