Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2079 ATGATGAAAGGTTTGGCGGCGGATGAGAATATGTCGAATTTGACATGTGCATCTAGTGAAATAAGCGCTTCTTCTGGGACCAGAATTGATACTCCTGTCTCTCTCTATCCTCATAACCAGTACTCCTCCACTTCAGTAATTCAAGAACCACAACCCAAAAAGAAGAGAAACCTTCCGGGCAATCCAGACCCAGAGGCTGAAGTAGTAGCCTTGTCTCCAAAGACCCTCTTGGCAACAAACCGGTTCTTCTGTGAGATATGCAACAAAGGGTTTCGGAGAGACCAAAATCTGCAGCTTCACAGAAGAGGGCACAACTTGCCATGGAAGCTGAAGCAAAGAAACAACAAAGAAGTGATTAAGAAGAAGGTGTACGTGTGCCCCGAAGTGACATGTGTTCACCACGACCCCTCAAGGGCCCTCGGAGACCTCACCGGCATCAAGAAGCACTTCTGCAGGAAGCACGGCGAGAAAAAATGGAAGTGTGAAAAATGCTCCAAACGTTACGCAGTTCAGTCTGACTGGAAGGCTCACTCTAAAATTTGTGGCACCAAGGAGTACAAATGTGATTGCGGAACCATCTTCTCTAGAAGGGACAGTTTCATAACACACAGAGCCTTCTGTGATGCTTTAGCACAGGAGAGTGTAAGAGCAGTCACAGCAGTGAGCCCTCTTCTTCATAGCCATCCCCTCCAAGCTCCACCTCCATTATTACTCTCCAAGAAACAACAAGATAACTTTCCACCATGGCTGGGAGGAGAATCTGCTGCAACTACTGGAGGAAACATTCTCATCAGGCCTTTAATCTCATCCTCATCACATCTAGACCAATCCTTAAACTTAATCCACCAAAACCCTAATAATCACCCCACAACACCTTCCCTTCCTCGTTTCCAATCCCCAGCCTCCTCTCCTTACATGTCAGCTACTGTTCTGTTGCAGAAAGCATCACAAATAGGTCACATGCCTCAATCTGATCCTCAATGTACCACCATTATGCCTAATTCAACCTCTTCTTCAGCTGTTTCTGGTTTGGGTATGCCTTCACGTGACGACCAGATAATAATGGGATTGCCTCATGCCTTGGCTTCTTATGGGAATAAAGCTGCTGATGGTTTTGTTACCTCTGATAATTACTTAGAAGATGGTGCAACTCCACCTAATAATGCTACTTCTCTTTTCCATGACATGATGGTTAATAATAATAATACTGCTTCTTCGGCTAATAACAATGCCTTTGATGTGAGGTCGTCTTCTTCCTTCGAGGATGCTTTGAGAGGAATGTTGAATGGTAATCCAACAAGAGATCACACTACTGCAGCCGCTAGCGATGAAATGACCAGAGATTTTCTGGGTCTCAAGGCATTTTCTCAGAAAGATTTTTTCAACATATCGGGGCTTGATCATTTGGGTTCTTCGACGTCGTATGGTAAGCAAAGTCGCAACCAAACACCTTGGCAAGGCTAA 1464 0.4501 MMKGLAADENMSNLTCASSEISASSGTRIDTPVSLYPHNQYSSTSVIQEPQPKKKRNLPGNPDPEAEVVALSPKTLLATNRFFCEICNKGFRRDQNLQLHRRGHNLPWKLKQRNNKEVIKKKVYVCPEVTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAQESVRAVTAVSPLLHSHPLQAPPPLLLSKKQQDNFPPWLGGESAATTGGNILIRPLISSSSHLDQSLNLIHQNPNNHPTTPSLPRFQSPASSPYMSATVLLQKASQIGHMPQSDPQCTTIMPNSTSSSAVSGLGMPSRDDQIIMGLPHALASYGNKAADGFVTSDNYLEDGATPPNNATSLFHDMMVNNNNTASSANNNAFDVRSSSSFEDALRGMLNGNPTRDHTTAAASDEMTRDFLGLKAFSQKDFFNISGLDHLGSSTSYGKQSRNQTPWQG 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2079 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Acco05g2079 487 SMART c2h2final6 82 104 IPR013087 -
Acco05g2079 487 SMART c2h2final6 159 179 IPR013087 -
Acco05g2079 487 SMART c2h2final6 124 154 IPR013087 -
Acco05g2079 487 Gene3D Classic Zinc Finger 61 132 - -
Acco05g2079 487 MobiDBLite consensus disorder prediction 42 64 - -
Acco05g2079 487 FunFam protein indeterminate-domain 5, chloroplastic-like 137 216 - -
Acco05g2079 487 FunFam protein indeterminate-domain 12-like 61 130 - -
Acco05g2079 487 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Acco05g2079 487 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 458 IPR031140 -
Acco05g2079 487 Gene3D Classic Zinc Finger 137 216 - -
Acco05g2079 487 Pfam Zinc-finger double-stranded RNA-binding 82 104 IPR022755 -
Acco05g2079 487 SUPERFAMILY beta-beta-alpha zinc fingers 81 179 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2079 Acco-ChrAcco05 37093648 37095748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2079 8 409 IDZ Gene Family AT1G55110 47.321 5.70e-119 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco05g2079 zf-C2H2_jaz 4.6e-05 CL0361