Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2047 ATGGTGATCGGAGAACTAATTTGTTTTCCCTCAAACTTCAGTTTGCAGTCGAAATTGTCTGATAATACAACCATCGCAATGCCCGTCGATGGTTTAGCTATCAACTTAAATGGCAGTGCCGGTGATTGCGATTATCCACCTTCCATCGATTCCTCCACCGCTCTCCACCCTTTTCTTTCCAATGATCTCACTCCCATTGATTTGGATTCGCTATGCGAAGATTTCGACGCTTCTTTTGATGCTTTTGCATGCGATCATTTCCGCATCTTCGAGTTTAAGATCCGCAAATGCGCGCGTTCCCGGTCACATGACTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCGCGTCGGAGAGACCCTCGGAAATTTCACTATTCCGGCACCGCATGCTCCGAGTTTCGCAAAGGTAACTGCAAGAAAGGTGACTCGTGCGAGTTTGCTCACGGAGTGTTTGAATGCTGGCTTCACCCATCTCGTTACAGAACCCAATCCTGCAAGGACGGAACAAATTGTCGCCGCCGAGTTTGTTTCTTCGCCCATACACCGGAACAATTGCGGTTCCTCGCTAACGGCTCAGGCGAATCATCTGAGGGGTCGCCGATCTGTCACGCTTCCTTCGTTTCATCGCCGACATCCGTACTCCAGCCGTCGCCGATCTCTTCATTGGCCGAATCCCCGCCCACATCGCCGGGAAATCCCCGACACGGTTGGAGTGAAATAAGCGCATCAGTGTGTAATGCTCAAAGCGATAAGCCGCCTTCAACTCGAGCTCCTCACTTGCGCGGTGCGCTCGGCTCACCTCATGGCATCCATATGGCTCCGGTATTCGGTTCGCCCCGTGCTTCGAATCTCCGACCCGGATTTCTTAGCCTCCCTTCGACTCCGACCCGGATGGTAATCAAATCTGAAATTCATAATCTGGACATGTGGGATCAAAGCCACCAAGAGGAACCTGCCATGGAAAGGGTTGAGTCGGGAAGAGAACTCAGAGCCAAAATGTACGCTAAGCTCTGTAAGGAGAATTCATTCGGGCGAAGCAACACAAAATTTTCGGGAATGTTCTGA 1071 0.5154 MVIGELICFPSNFSLQSKLSDNTTIAMPVDGLAINLNGSAGDCDYPPSIDSSTALHPFLSNDLTPIDLDSLCEDFDASFDAFACDHFRIFEFKIRKCARSRSHDWTECPYAHPGEKARRRDPRKFHYSGTACSEFRKGNCKKGDSCEFAHGVFECWLHPSRYRTQSCKDGTNCRRRVCFFAHTPEQLRFLANGSGESSEGSPICHASFVSSPTSVLQPSPISSLAESPPTSPGNPRHGWSEISASVCNAQSDKPPSTRAPHLRGALGSPHGIHMAPVFGSPRASNLRPGFLSLPSTPTRMVIKSEIHNLDMWDQSHQEEPAMERVESGRELRAKMYAKLCKENSFGRSNTKFSGMF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2047 356 MobiDBLite consensus disorder prediction 217 240 - -
Acco05g2047 356 SMART c3hfinal6 126 152 IPR000571 GO:0046872
Acco05g2047 356 SMART c3hfinal6 161 184 IPR000571 GO:0046872
Acco05g2047 356 ProSiteProfiles Zinc finger C3H1-type profile. 127 153 IPR000571 GO:0046872
Acco05g2047 356 Gene3D - 122 193 - -
Acco05g2047 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 151 IPR000571 GO:0046872
Acco05g2047 356 PANTHER UNKEMPT FAMILY MEMBER 50 350 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2047 Acco-ChrAcco05 36849382 36850452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2047 76 228 C2H2 Transcription Factor Family AT5G12850 56.209 2.92e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco05g2047 zf-CCCH 7.5e-06 CL0537