Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2045 ATGGAGGAATATAATAATAATCTGAGCGAAAACAATGGTGGAAGGCCTAATTTCTTGTACTCTTCAACTGGTATTGGCTACGGAGGAAGAAGTAGCAGCGGTGGTGGCTCCAGCGTTGCTCATCATCAGTTACATCCTGCCGTCAATACTTTTCATCTTCACTCTGATTACTTTCATCATCAATCCGATCAGCCACATCCTACCGTGAAAACCGAGGCCAATACCTCCCACCACCACGCTCAGATTTTTCAGTATCCTCTTCTCAGAGGAAATCTTCACATGATGCACCACCAAGCAGGAGGTGCTGATAGCTCCAATAACGAGGTTGAAGCTATTAAGGCTAAAATCACTGCTCATCCTCACTATTCCAACCTTCTTCAAGCTTACATGGATTGCCAAAAGGTGGGAGCTCCACCGGAAGTGGTGGCACGTCTGGCTGCTGTGCATCAGGAGTTTGAGGCACGGCAGCGATCTTCTTCGGCTTCCAGGGAAGTTTCCAAGGACCCTGAACTGGACCAATTCATGGAAGCTTATTATGACATGCTTGTCAAGTATCGTGAGGAATTGACGAGGCCTATCCAAGAAGCCATGGATTTCATGCGCAGGATTGAAACTCAGCTCAATATGCTTTGCAATGGATCCATTCGCATCTTCTCTGACGATAAGTGTGAAGGGGTTGGTTCGTCTGAAGAGGATCAAGACAATAGTGGTGGAGAAACAGAATTGCCAGAGATTGATCCCAGAGCTGAAGACCGTGAACTTAAGAACCACTTACTGAGAAAATATAGCGGTTACTTAAGCAGCCTCAAGCAAGAACTGTCCAAGAAAAAGAAGAAAGGAAAACTGCCCAAAGATGCCAGGCAAAAGCTCCTCAGCTGGTGGGAATTACACTACAAGTGGCCCTATCCTTCGGAGTCAGAGAAGGTGGCGTTGGCTGAATCAACCGGATTGGACCAGAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAGCCATCTGAAGACATGCAATTTATGGTGATGGATGGGCTTCATCCACAGAACGCAACTCTCTATATGGATGGTCACTACATGCCCGATGGTCACTACCGACCTGAACAAGAAAGAGCCACAATTTCCAAACAAGTGAGGCAAACGCATTTAAAGTGGACTGTGCATGCTTTCTGGCATTTTCAGTACACTTTAGGAGCTTCGATGGATCGGGTAGCAATAAGTAATTCAGATGTTGTTGGATGTTTTCAAGTTATGAGAAGGATGTGTCGTTGTTGA 1281 0.4567 MEEYNNNLSENNGGRPNFLYSSTGIGYGGRSSSGGGSSVAHHQLHPAVNTFHLHSDYFHHQSDQPHPTVKTEANTSHHHAQIFQYPLLRGNLHMMHHQAGGADSSNNEVEAIKAKITAHPHYSNLLQAYMDCQKVGAPPEVVARLAAVHQEFEARQRSSSASREVSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGSIRIFSDDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMPDGHYRPEQERATISKQVRQTHLKWTVHAFWHFQYTLGASMDRVAISNSDVVGCFQVMRRMCRC 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2045 426 SMART KNOX2_2 161 212 IPR005541 GO:0003677|GO:0005634
Acco05g2045 426 SMART HOX_1 275 340 IPR001356 GO:0003677
Acco05g2045 426 FunFam Homeobox protein knotted-1-like 2 278 340 - -
Acco05g2045 426 Gene3D - 278 340 - -
Acco05g2045 426 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 79 343 - -
Acco05g2045 426 Pfam ELK domain 253 274 IPR005539 GO:0003677
Acco05g2045 426 SUPERFAMILY Homeodomain-like 274 349 IPR009057 -
Acco05g2045 426 SMART ELK_2 253 274 IPR005539 GO:0003677
Acco05g2045 426 SMART KNOX1_2 110 154 IPR005540 GO:0003677|GO:0005634
Acco05g2045 426 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Acco05g2045 426 CDD homeodomain 285 337 IPR001356 GO:0003677
Acco05g2045 426 Pfam KNOX2 domain 165 211 IPR005541 GO:0003677|GO:0005634
Acco05g2045 426 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Acco05g2045 426 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
Acco05g2045 426 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Acco05g2045 426 MobiDBLite consensus disorder prediction 222 250 - -
Acco05g2045 426 Pfam KNOX1 domain 111 153 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2045 Acco-ChrAcco05 36814759 36818432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2045 58 368 Homeobox Transcription Factor Family AT4G08150 70.938 7.06e-149 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Acco05g2045 KNOX2 2.2e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2045 05 36814759 36818432 Acco05g2045 05 36814759 36818432 ECH