Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2040 ATGGGGAGGGCTCCTTGCTGTGATAAAGCAAACGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGACGCCAAACTCAAGTCCTACATCGAGCAACATGGAACTGGTGGTAACTGGATCGCTTTGCCTCAAAAGATCGGGCTAAAGAGATGTGGGAAGAGTTGTCGACTGAGGTGGCTAAACTATCTTCGACCAAATATAAAGCATGGGGGTTTCTCTGAAGAAGAAGACAACATTATTTGCAGCCTCTACGTTAGTATTGGAAGCAGGTGGTCGGTGATAGCAGCACAATTGCCGGGAAGAACAGACAACGACATAAAGAATTACTGGAACACAAAACTCAAGAAGAAGCTTCTGGCCAATAAGCACCGTAAAGATCAACAATCACGTAGTAAGAGCAAGCAGGAAGGAGCTAATAGAATCATCACCTCTCCTAATTCCTTATTAGTTCCTGAAAATTCTACTAATACCATTTTCCCACAACCATATTGGCCACTCATACCTGTAATACCTCCCTTGCAATATTCATCAAATCAAGACCCATGTTTCAACGATCAAGATGCCATCAAAAAATTGCTCATGAAACTAGGAGGAAGATTTTCTGATGAGGATAACGGGTGGTCCAGTCAGCATGGTTCCCACCAGATAGGGTCTGGGGTTGATCACCATAATTATCGCCCTACCCTTGATGCTTTGAATATTAATCCTAATATATTCCCAGATGGTATTCCCAGCTGCACACAACCTGTTTGTGAAGAACAATCCAATATTGCTTCTTCTTCCTCTTGCATGGTAAATAATGATACGATTGTTAACAACAACAATCACATAGAATTGCTGGCCCAAGAGACAGGACGACTTGAAGAGATAGTACTATGCAATAATAGTACTTGTACTTACCCACAAAGATTAGATGGACTGGAATTGTTGTTTGGGGAGGACATGATGGTCAATGACAAGATAGCCCCACTTGCAGACCCCAATTCTCTCATTTATCAATCTTTTGTTTCTTCTAATTACCAGGGTATGCCACAACAATGTGCTTCAGAATTAAGGTTTAATAACCGCCCATAA 1071 0.4183 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTKLKKKLLANKHRKDQQSRSKSKQEGANRIITSPNSLLVPENSTNTIFPQPYWPLIPVIPPLQYSSNQDPCFNDQDAIKKLLMKLGGRFSDEDNGWSSQHGSHQIGSGVDHHNYRPTLDALNINPNIFPDGIPSCTQPVCEEQSNIASSSSCMVNNDTIVNNNNHIELLAQETGRLEEIVLCNNSTCTYPQRLDGLELLFGEDMMVNDKIAPLADPNSLIYQSFVSSNYQGMPQQCASELRFNNRP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2040 356 Gene3D - 70 141 - -
Acco05g2040 356 PANTHER OS09G0431300 PROTEIN 1 241 - -
Acco05g2040 356 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Acco05g2040 356 FunFam Transcription factor MYB36 70 139 - -
Acco05g2040 356 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Acco05g2040 356 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Acco05g2040 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Acco05g2040 356 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Acco05g2040 356 Gene3D - 7 68 - -
Acco05g2040 356 MobiDBLite consensus disorder prediction 119 144 - -
Acco05g2040 356 CDD SANT 71 111 IPR001005 -
Acco05g2040 356 FunFam Transcription factor RAX3 7 68 - -
Acco05g2040 356 CDD SANT 16 62 IPR001005 -
Acco05g2040 356 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Acco05g2040 356 SMART sant 13 64 IPR001005 -
Acco05g2040 356 SMART sant 67 115 IPR001005 -
Acco05g2040 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2040 Acco-ChrAcco05 36766346 36767797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2040 1 269 MYB Transcription Factor Family AT5G57620 50.916 2.78e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco05g2040 Myb_DNA-binding 2.5e-14 CL0123