Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2028 ATGGATTCTGATCAAGCCAAGCTGTTTGTGGGTGGCATTTCCCGGGACACTACCGAAGATGTTTTGAAAGACCACTTCGCCAAGTACGGCTCTGTTTTGGGTTCCACAATCTCGTTGGACCGCAACACCAAAATTCCTAGAGGCTTTGGCTTCGTTCGGTTCTCCGACGTTTCCGCGGCTGATAAAGCCCTTCAAGACACGCATATCATACTCGGAAGAACGGTAGAAGTGAAGAAAGCAATACCTAGAAGTGAACATCAACATCAAAACCTACCCCAGAATAGAGGGACGAGTAACTGTGGTAATTATGACAGTAGTAGCGACCACGTTAGCACCAAAAAGGTTTTTGTTGGAGGCCTATCAGCTGGTATATCTGAGGACGAGTTTAAGAAATATTTCGAGAGATTTGGTAGAATAACGGATGTAGTGGTGATGCAGGACAGTATAACTCACCGGCCTAGGGGGTTTGGTTTCATTACTTTTGATTCAGAAGAATCTGTTGAAAGTGTGATGGTGAAAAGCTTCCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTGCCGAAAGACGGGAACAATAATTATGATGGTGGTAATAGAATGAGATACAAGAATGGGAGAGGAGCCCCTAAAGGTCCCGCTCAGTATAGTCCTCGGTACATTCCTCCTGCAGTTGCACCTCCTCCCTGTTACGGCAGTGACGGATTGTATTTTTATGGATCTAACATGTATGGTTGCTGGTTCCCTATGGGAGGCTATGGTTGCAATGGATCTGCAGTTCCATTTGATGTTCCTAGGAATATCTGGTATGGTCCTCCGGTAGCAACTGCTCAGACATGCCAGGTGCCTTATGCTTCTCCAACCCACGCATATGGGACTGTTAGGGGTGTACTCGGTACTGAAACTAGGGGCTACAATGGCACCATGGGATCTGCAGAAAATTTTAAATTCAACCAGGTTTTCAGTACCAATGGATTTCTACCAGCTGATGTTACGTCATCATCTCCCAAGATTGAAGAGTTGAGGCAGGAAGTGGAGTCTCTAAGTTTGAAAGAAACCAAGGCTGAAGCTTCTAGCTAA 1086 0.4586 MDSDQAKLFVGGISRDTTEDVLKDHFAKYGSVLGSTISLDRNTKIPRGFGFVRFSDVSAADKALQDTHIILGRTVEVKKAIPRSEHQHQNLPQNRGTSNCGNYDSSSDHVSTKKVFVGGLSAGISEDEFKKYFERFGRITDVVVMQDSITHRPRGFGFITFDSEESVESVMVKSFHDLNGRQVEVKRAVPKDGNNNYDGGNRMRYKNGRGAPKGPAQYSPRYIPPAVAPPPCYGSDGLYFYGSNMYGCWFPMGGYGCNGSAVPFDVPRNIWYGPPVATAQTCQVPYASPTHAYGTVRGVLGTETRGYNGTMGSAENFKFNQVFSTNGFLPADVTSSSPKIEELRQEVESLSLKETKAEASS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2028 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 181 IPR000504 GO:0003723
Acco05g2028 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Acco05g2028 361 SUPERFAMILY RNA-binding domain, RBD 105 211 IPR035979 GO:0003676
Acco05g2028 361 SUPERFAMILY RNA-binding domain, RBD 3 102 IPR035979 GO:0003676
Acco05g2028 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Acco05g2028 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Acco05g2028 361 MobiDBLite consensus disorder prediction 86 105 - -
Acco05g2028 361 MobiDBLite consensus disorder prediction 190 215 - -
Acco05g2028 361 MobiDBLite consensus disorder prediction 82 105 - -
Acco05g2028 361 Gene3D - 101 219 IPR012677 -
Acco05g2028 361 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 314 - -
Acco05g2028 361 SMART rrm1_1 7 78 IPR000504 GO:0003723
Acco05g2028 361 SMART rrm1_1 114 186 IPR000504 GO:0003723
Acco05g2028 361 CDD RRM2_Hrp1p 114 191 - -
Acco05g2028 361 Coils Coil 340 360 - -
Acco05g2028 361 Gene3D - 1 91 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2028 Acco-ChrAcco05 36651545 36652905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2028 8 251 Eukaryotic Initiation Factors Gene Family AT2G36660 25.296 7.11e-17 80.1