LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g2022	ATGTTCTTCCACGACGACATCGTTGAATCCCTCCAGTTCCCGCCATGCCCGCTTCTCGAAACCATGCTGGTGCCAGGTGACGCTCAGGCGTTATTGTCCCTCATTCAAGCCGAGGAGGATCCGGCTAGCCCAAGCTCCGTTTCGCAGGGATCGTCAAACCGGGCGGTTTACTCGTTGGACGAGAGAAAGCGCAGGCGCATGCAGTCGAACCGGGAGTCAGCACGGCGGTCCCGCTGGAGAAAGAAGAGACATTTAGAGAACCTCACGAACCAAGGGAACCGCCTAAAAACAGAAAACCGACAACTCAAAAACCAGCTCGGCTTCACCCTTCACCAGCATCTCATTCTCTCCCTGGAGAACGCCCAACTAAGATCCGAATCCGAAATCCTCATGACCCGGCTGTCGCATCTTTATCGGGCTTTAGGCACACCACTCTAA	438	0.5502	MFFHDDIVESLQFPPCPLLETMLVPGDAQALLSLIQAEEDPASPSSVSQGSSNRAVYSLDERKRRRMQSNRESARRSRWRKKRHLENLTNQGNRLKTENRQLKNQLGFTLHQHLILSLENAQLRSESEILMTRLSHLYRALGTPL	145

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco05g2022	145	Coils	Coil	85	105	-	-
	Acco05g2022	145	Pfam	bZIP transcription factor	62	106	IPR004827	GO:0003700\|GO:0006355
	Acco05g2022	145	MobiDBLite	consensus disorder prediction	38	94	-	-
	Acco05g2022	145	PANTHER	BZIP TRANSCRIPTION FACTOR 44	44	141	-	-
	Acco05g2022	145	Gene3D	-	60	113	-	-
	Acco05g2022	145	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	60	106	IPR004827	GO:0003700\|GO:0006355
	Acco05g2022	145	MobiDBLite	consensus disorder prediction	39	56	-	-
	Acco05g2022	145	SMART	brlzneu	58	129	IPR004827	GO:0003700\|GO:0006355
	Acco05g2022	145	SUPERFAMILY	Leucine zipper domain	62	114	IPR046347	GO:0003700\|GO:0006355
	Acco05g2022	145	CDD	bZIP_plant_GBF1	63	113	IPR045314	GO:0003700\|GO:0006355
	Acco05g2022	145	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	65	80	IPR004827	GO:0003700\|GO:0006355
	Acco05g2022	145	FunFam	BZIP transcription factor	60	111	-	-
	Acco05g2022	145	MobiDBLite	consensus disorder prediction	57	74	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g2022	Acco-ChrAcco05	36588907	36589344	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g2022	17	141	bZIP Transcription Factor Family	AT3G49760	38.168	7.62e-21	81.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Acco05g2022		bZIP_1	3.7e-09	CL0018