Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2000 ATGGCACACTCTGTCAATACGCCATTGGCTTCTGTCAACGTGCAGGACAACGAGATTTCCGTTGCGCATACAATCACATCACGCACCCCGCAGCACAAAGTCAAACGCCGTTCAACAGTTACTACCCTCGAGGTAGAGAAGGCACAGATGGAAACTTATCTGAATGAGAACTTTGGGGATGTGAAGCCTAAGAACTCGTCGGAGGAAGCGCTCCAGCGATGGAGAAAACTTTGTTGGCTCGTGAAAAACCGTAAGAGGAGATTTCGCTTCACTGCCAATCTCTCCAAACGATTCGAAGCGGAAGCTATAAGACGCTCTAATCAGGAGAAGTTCCGAGTTGCCGTCTTGGTTTCACAAGCTGCACTTCAGTTTATCCATGGTCTAAAATTGTCCAGTGAATACACTGTACCCGAAGAAGTTAGAGCTGCAGGTTTTGAAATTTGTGCTGACGAGTTGGGATCAGTTGTTGAAAGTCGTGATGTCAAGAAGCTAAGAATTCATGGAGGGATTGAGGGTATTTCTAACAAGCTTGCTACCTGTTTAGATGAGGGGTTACCAACTTCTGAGCAATTACTAAATAAGAGGAAAGAGATTTATGGAATTAATAGATTCACTGAAAGCCCTGTCCGGAGGTTTTGGATTTTTCTTTGGGAAGCCCTTCAAGATACAACCCTCTTGATACTTGCTGTTTGTGCTTTAGTCTCTTTGTTGGTTGGCATAATCATGGAAGGATGGCCTAAGGGTGCACATGATGGAATTGGTATTGTTGCTAGCATATTACTTGTTGTGTTTGTCACTGCCACAAGTGATTATAGACAATCATTACAGTTTAAAGATCTAGATAGGGAGAAGAAAAAGATTACAGTTCAGGTCACACGAAATGGATGCAGACAGAAGATTTCAATATATGATTTGCTTCCTGGTGATATTGTTCACCTAAATATTGGAGATCAGGTCCCTGCTGATGGACTCTTTGTGTCAGGTTTCTCTGTGTTGATAAACGAATCAAGTTTGACAGGAGAGAGTGAACCAATGAAAGTCAATGATCATAACCCTTTTCTTCTTTCTGGAACTAAAGTTCAGGATGGATCCTGCAGGATGCTTGTAACTACCGTAGGAATGAGAACCCAGTGGGGAAAACTAATGGCCACTTTAAGTGAAGGGGGAGATGATGAAACTCCCTTGCAGGTTAAACTCAATGGTGTAGCTACCATTATTGGGAAAATAGGCCTTTTCTTTGCTGTTGTGACGTTTAGTGTTTTGGTCCAAGGACTATTTAGCCACAAACTACAAGAAGGGTCCCACTGGAAGTGGTCTAGTGGAGATGCTAGGGAAATTTTGGAATTCTTTGCGATTGCTGTTACTATTGTTGTTGTTGCAGTTCCTGAAGGCTTACCCTTAGCTGTAACATTGAGCCTTGCTTTTGCTATGAAAAAGATGATGAGTGATAAGGCTCTTGTCCGTCATCTGGCTGCTTGTGAAACAATGGGATCTGCCACTACTATTTGTAGCGACAAGACTGGCACTCTCACCACTAACCATATGACTGTTGTGAAAGCTTGCATATGTAGGAAGATAAAGGATGTAGGTAGCTCTAAAATTTCTTCTGATTTCTTAACTGATGTCCCTGATTCTGGTATGAGAATTCTCCTTCAATCAATATTTACTAACACTGGAGGAGAAGTTGTCAAAGACAAAAATGACAAGATTGAGATTCTGGGAACGCCAACTGAGAGTGCACTATTAGAATTTGGGATATCCCTTGGTGGTGATTTCCTTCAGGAACGACAAATGTCAAAAATTGTGAAAGTGGAACCCTTTAACTCTATGAAGAAGTGCATGGGAGTGGTTCTTGAGCTTCCTGATGGTAGCTTCAGAGCACATTGCAAAGGTGCCGCTGAGATAACTCTTACTAATTGTGACCAGGTTATAGACTCTTGCGGCAAGGTTGTTCCACTTGATGAAGAATCCATCAATGAGTTGAAGAATACAATCGAAAAGTTTGCCAGTGAAGCTCTGCGAACTATTTGCCTTGCCTACATGGAGATTGGGAGAGAATACTCTGTTGAAAGTGCTATTCCTAGTAGTCGATACACATGTATAGGAATTGTGGGTATCAAAGATCCCGTTCGCCCTGGTGTTCGAGAGTCTGTTGCCATTTGTAGGGCAGCTGGAATGTCTGTTAGAATGGTTACTGGAGATAACATACATACTGCCGAGGCAATCGCTAGAGAGTGTGGAATTCTAACTGATGGCATAGCAATTGAAGGTCCTGAGTTCCGGGAGAAGAATGACCAGGAATTGCATGATTTAATTCCCAAAATTCAGGTAATGGCTCGATCTTCACCCATAGATAAGCATACCCTGGTAAAACATTTAAGGACCACATTTGAAGAAGTAGTTGCAGTTACTGGTGACGGTACAAATGATGCTCCTGCACTTCATGAAGCAGATATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTAGCAAAAGAAAGTGCAGATGTAATAATACTAGATGATAACTTCTCCACTATCGTGACTGTGGCCAAATGGGGTCGGTCAGTCTACGTAAACATACAGAAATTTGTGCAGTTCCAGCTAACTGTAAATGTTGTTGCTTTGATTGTCAACTTCTCTTCTGCCTGTTTGACTGGGAATGCTCCCCTCACTGCTGTACAACTTCTATGGGTCAACATGATCATGGACACTTTAGGAGCACTTGCGCTGGCAACTGAACCTCCTAATGTTGACTTGATGAAAAGGCCACCTGTTGGTAGGAAAGGAAACTTTATCAGTAATGTGATGTGGAGGAATATCTTGGGACAGGCTTTATATCAGTTTGCTATCATCTTGTTCCTCCAGACCAGAGGAAAAGTAGCTTTTCATCTTGAAGGCCCGGATACTGATTTGACATTGAACACGCTCATTTTCAACTCGTTTGTATTTTGTCAGGTTTTCAATGAGATCAGTTCCAGAGAGATGGAGAAGATAAATGTCTTTGAGGGTATACTCAAGAATTATGTATTTGTGGCTGTCCTCACTTGTACTGTCCTCTTTCAAATTATAATTGTGGAGTTCTTGGGCACGTTTGCAAACACATCTCCCCTTAGTTGGAAGCAGTGGCTTGGTAGTGTTTTCTTTGGATTTCTGGGAATGCCAATTGCGGCAGCTTTAAAGATGATCCCTGTGTGA 3198 0.4237 MAHSVNTPLASVNVQDNEISVAHTITSRTPQHKVKRRSTVTTLEVEKAQMETYLNENFGDVKPKNSSEEALQRWRKLCWLVKNRKRRFRFTANLSKRFEAEAIRRSNQEKFRVAVLVSQAALQFIHGLKLSSEYTVPEEVRAAGFEICADELGSVVESRDVKKLRIHGGIEGISNKLATCLDEGLPTSEQLLNKRKEIYGINRFTESPVRRFWIFLWEALQDTTLLILAVCALVSLLVGIIMEGWPKGAHDGIGIVASILLVVFVTATSDYRQSLQFKDLDREKKKITVQVTRNGCRQKISIYDLLPGDIVHLNIGDQVPADGLFVSGFSVLINESSLTGESEPMKVNDHNPFLLSGTKVQDGSCRMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLFSHKLQEGSHWKWSSGDAREILEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMSDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICRKIKDVGSSKISSDFLTDVPDSGMRILLQSIFTNTGGEVVKDKNDKIEILGTPTESALLEFGISLGGDFLQERQMSKIVKVEPFNSMKKCMGVVLELPDGSFRAHCKGAAEITLTNCDQVIDSCGKVVPLDEESINELKNTIEKFASEALRTICLAYMEIGREYSVESAIPSSRYTCIGIVGIKDPVRPGVRESVAICRAAGMSVRMVTGDNIHTAEAIARECGILTDGIAIEGPEFREKNDQELHDLIPKIQVMARSSPIDKHTLVKHLRTTFEEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYVNIQKFVQFQLTVNVVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNVDLMKRPPVGRKGNFISNVMWRNILGQALYQFAIILFLQTRGKVAFHLEGPDTDLTLNTLIFNSFVFCQVFNEISSREMEKINVFEGILKNYVFVAVLTCTVLFQIIIVEFLGTFANTSPLSWKQWLGSVFFGFLGMPIAAALKMIPV 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2000 1065 CDD P-type_ATPase_Ca_PMCA-like 192 937 - -
Acco05g2000 1065 Pfam Cation transporter/ATPase, N-terminus 168 235 IPR004014 -
Acco05g2000 1065 SFLD p-type atpase 485 856 IPR044492 -
Acco05g2000 1065 SFLD Haloacid Dehalogenase 485 856 - -
Acco05g2000 1065 Gene3D - 66 126 - -
Acco05g2000 1065 FunFam Calcium-transporting ATPase 821 1065 - -
Acco05g2000 1065 FunFam Calcium-transporting ATPase 698 849 - -
Acco05g2000 1065 Pfam Cation transport ATPase (P-type) 564 642 - -
Acco05g2000 1065 Gene3D - 513 709 IPR023299 GO:0000166
Acco05g2000 1065 ProSitePatterns E1-E2 ATPases phosphorylation site. 505 511 IPR018303 -
Acco05g2000 1065 PANTHER CATION TRANSPORTING ATPASE 120 1064 - -
Acco05g2000 1065 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 1064 IPR023298 -
Acco05g2000 1065 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 509 714 IPR023299 GO:0000166
Acco05g2000 1065 SUPERFAMILY Calcium ATPase, transduction domain A 287 383 IPR008250 -
Acco05g2000 1065 Gene3D - 218 1062 - -
Acco05g2000 1065 FunFam Calcium-transporting ATPase 513 709 - -
Acco05g2000 1065 FunFam Calcium-transporting ATPase 66 126 - -
Acco05g2000 1065 Pfam Ca2+-ATPase N terminal autoinhibitory domain 54 98 IPR024750 GO:0005516
Acco05g2000 1065 PRINTS P-type cation-transporting ATPase superfamily signature 702 713 - -
Acco05g2000 1065 PRINTS P-type cation-transporting ATPase superfamily signature 828 840 - -
Acco05g2000 1065 PRINTS P-type cation-transporting ATPase superfamily signature 334 348 - -
Acco05g2000 1065 PRINTS P-type cation-transporting ATPase superfamily signature 724 734 - -
Acco05g2000 1065 PRINTS P-type cation-transporting ATPase superfamily signature 804 823 - -
Acco05g2000 1065 PRINTS P-type cation-transporting ATPase superfamily signature 503 517 - -
Acco05g2000 1065 PRINTS H+-transporting ATPase (proton pump) signature 661 679 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco05g2000 1065 PRINTS H+-transporting ATPase (proton pump) signature 804 820 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco05g2000 1065 PRINTS H+-transporting ATPase (proton pump) signature 836 861 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco05g2000 1065 NCBIfam calcium-translocating P-type ATPase, PMCA-type 158 1065 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Acco05g2000 1065 NCBIfam HAD-IC family P-type ATPase 775 885 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco05g2000 1065 NCBIfam HAD-IC family P-type ATPase 444 525 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco05g2000 1065 NCBIfam HAD-IC family P-type ATPase 255 426 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco05g2000 1065 FunFam Calcium-transporting ATPase 266 386 - -
Acco05g2000 1065 SMART Cation_ATPase_N_a_2 169 240 IPR004014 -
Acco05g2000 1065 Pfam haloacid dehalogenase-like hydrolase 700 818 - -
Acco05g2000 1065 Pfam Cation transporting ATPase, C-terminus 889 1063 IPR006068 -
Acco05g2000 1065 SUPERFAMILY HAD-like 501 909 IPR036412 -
Acco05g2000 1065 Gene3D - 500 849 IPR023214 -
Acco05g2000 1065 Gene3D - 189 386 - -
Acco05g2000 1065 Pfam E1-E2 ATPase 286 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2000 Acco-ChrAcco05 36399065 36406703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g2000 50 1065 Primary Pumps ATPases AT1G27770 80.531 0.0 1679