Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1993 ATGGAGCCACTTGGAGTTATCCCTGATGGGGAAATGAGTTTCGTTCAAGGAATATTTGCCTCAGAAGAGCATGATTACTCGCCACAATTTCTTGGCCAATGCTCACTTATGCTCGGGGAACGTGATCAAATGCTCATAGGATTAGAATCTACATTTTGCTCTGCTCCTGAAGCTGCAGAAAATGAGCGCATGTTTAATTCTGTAGATGCTCTCAACCCAGATTTGCAGTTTATTTCTCAAGAGAGTAGTTTCAGTAATGACTGTAGTGGCGATGCTTTCTTCCTTGCCAACCTGGGTCATATGAGTTACTATCTCAGTGATCCTAATCGGGCACTAGCAAATGATGCCTGCATGTTCATGAATGTTTGCACGATGCATGAGAACGACGCTCGCACTTTCATCCCATCACCAGGAAACACTTTGGTAGAAGAAACTGTTAGCTTTAATGAAGGCAGGAGAGGGGACAAACTGGAGAATCCTTATCAAAGTCAAGCTGAATTCACAGCTTTTGCAGCCGAAAAGATGCACCTGAAAAGGAAGTCTGATGTGCCAGAACTGGAGGCCTCAGCTGAAGATAGAATTAACATAAATTCATCATCTGAGAACCAGAGGAAGAAACCTCGTGTTTCAAGAGATGTTCAAAAGAGTAAGAAGAATGCACAGCTAAAGAAGAACCAAAAGTTTGCAGGAAATGGCTGTGAGGCAGAAGAGACCGATACTGGATTACATGGACAGAGCTGCAGTAGTTACAGCTTAGAAGATGGTAATGCTTCTCAGGAAAATAGTGGAGGAGCTTCCTCAGAGTCCAAATCACTAGTGACTCGCAACACAAAGACCAGAGCCAGTAGGGGATCAGCAACAGATCCCCAGACCCTTTATGCCAGGAAAAGAAGAGAGAGAATAAATGAACGACTGAGAATCCTACAGAATCTTGTTCCAAATGGAACAAAGGTTGATATAAGCACAATGCTTGAAGAGGCAGTCCATTACGTGAAATTTTTGCAGCTCCAAATTAAGCTTTTAAGTTCTGATGACACGTGGATGTACGCTCCAATTGCTTATAATGGGGTTGACATTGGATTGAATCTCAGCCATGATTTCTCCACAAGCATGAGGATGGAAGAAACCAGTGATCCTGAAATGTCACTTCAGTAA 1155 0.4294 MEPLGVIPDGEMSFVQGIFASEEHDYSPQFLGQCSLMLGERDQMLIGLESTFCSAPEAAENERMFNSVDALNPDLQFISQESSFSNDCSGDAFFLANLGHMSYYLSDPNRALANDACMFMNVCTMHENDARTFIPSPGNTLVEETVSFNEGRRGDKLENPYQSQAEFTAFAAEKMHLKRKSDVPELEASAEDRININSSSENQRKKPRVSRDVQKSKKNAQLKKNQKFAGNGCEAEETDTGLHGQSCSSYSLEDGNASQENSGGASSESKSLVTRNTKTRASRGSATDPQTLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDTWMYAPIAYNGVDIGLNLSHDFSTSMRMEETSDPEMSLQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1993 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 285 351 IPR036638 GO:0046983
Acco05g1993 384 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 128 381 - -
Acco05g1993 384 Pfam Helix-loop-helix DNA-binding domain 295 335 IPR011598 GO:0046983
Acco05g1993 384 MobiDBLite consensus disorder prediction 204 219 - -
Acco05g1993 384 SMART finulus 291 340 IPR011598 GO:0046983
Acco05g1993 384 MobiDBLite consensus disorder prediction 182 295 - -
Acco05g1993 384 MobiDBLite consensus disorder prediction 241 289 - -
Acco05g1993 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 285 334 IPR011598 GO:0046983
Acco05g1993 384 FunFam Basic helix-loop-helix transcription factor 286 343 - -
Acco05g1993 384 CDD bHLH_AtIND_like 286 348 - -
Acco05g1993 384 Gene3D - 289 343 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1993 Acco-ChrAcco05 36314340 36315981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1993 253 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 76.316 9.52e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco05g1993 HLH 2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1993 05 36314340 36315981 Acco05g1993 05 36314340 36315981 ECH