Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1991 ATGGCTCTGGAAGCTCTCAAGTCACCCACCTCCGCTCCTCCCTCCTTCCCTTTCGAATTGGACTCCAATCTTCACTCCTTCGAGTCATGGACTAAGCGCAAGCGTTCCAAGCGTTCCCGTCTCGACCATCCCTCGTCATGCACCTCCGAGGAAGAGTATCTCGCTTCTATCTGCCTCATCATGCTCGCTCGCGGTGGCTCCGCTGTCTCCCCCACCAATCACACGGCCTCCAACCGTCATAGCTCGCCTTCTCCGGATAATCTTCTCCCTGCTGTATCTGAGTCGGCGCCGCTGTCCGCACCAGATCCAACCACCGCCCCCAAGCCCAGTTACAAATGCTCTGTTTGCGACAGGGCTTTCTCCTCTTACCAGGCTCTTGGAGGACACAAGGCCAGTCACAGAAAGCTCACCGCTGGCACCGCTCCCGGCGAAGATCATTCCACCTCCTCTGCCATCACGAGTACTTCCGCGAACACCACTACAACTGCGTCCAACGCAGGGGGTAAGTCCCACGAGTGTTCTATCTGCCACAAGTCCTTCCCCACCGGACAAGCTCTTGGAGGTCACAAGCGCTGTCACTACGACGGCGGTGCTGCCGCTGCAGCTGGCGGTGGTAGCAGCGCTGTCACTGCTTCAGAAGGAGTTGGATCCACCCATACCGTCAGCCACAGCCAGCGTGACTTCGACCTGAACCTTCCCGCTTTGCCTGACTTCTCTGCCAAATTCTTCACTCATGGCGAAGACGAAGTCGAGAGCCCTTTGCCGGTGAAGAGGCCGCGTCTTTTGATGGCACCGAAAACCGAAGAAGATCACTGA 816 0.5772 MALEALKSPTSAPPSFPFELDSNLHSFESWTKRKRSKRSRLDHPSSCTSEEEYLASICLIMLARGGSAVSPTNHTASNRHSSPSPDNLLPAVSESAPLSAPDPTTAPKPSYKCSVCDRAFSSYQALGGHKASHRKLTAGTAPGEDHSTSSAITSTSANTTTTASNAGGKSHECSICHKSFPTGQALGGHKRCHYDGGAAAAAGGGSSAVTASEGVGSTHTVSHSQRDFDLNLPALPDFSAKFFTHGEDEVESPLPVKRPRLLMAPKTEEDH 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1991 271 MobiDBLite consensus disorder prediction 247 271 - -
Acco05g1991 271 Gene3D Classic Zinc Finger 108 193 - -
Acco05g1991 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 193 IPR013087 -
Acco05g1991 271 MobiDBLite consensus disorder prediction 142 169 - -
Acco05g1991 271 SUPERFAMILY beta-beta-alpha zinc fingers 111 193 IPR036236 -
Acco05g1991 271 MobiDBLite consensus disorder prediction 127 169 - -
Acco05g1991 271 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 32 236 IPR044653 GO:0003700
Acco05g1991 271 MobiDBLite consensus disorder prediction 1 21 - -
Acco05g1991 271 Pfam C2H2-type zinc finger 111 135 - -
Acco05g1991 271 Pfam C2H2-type zinc finger 171 195 - -
Acco05g1991 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 133 IPR013087 -
Acco05g1991 271 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Acco05g1991 271 SMART c2h2final6 171 193 IPR013087 -
Acco05g1991 271 SMART c2h2final6 111 133 IPR013087 -
Acco05g1991 271 MobiDBLite consensus disorder prediction 68 89 - -
Acco05g1991 271 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Acco05g1991 271 MobiDBLite consensus disorder prediction 68 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1991 Acco-ChrAcco05 36290745 36291560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1991 1 261 C2H2 Transcription Factor Family AT1G27730 50.379 1.22e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco05g1991 zf-C2H2_6 1.7e-12 CL0361