LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g1967	ATGAAGAAGGGGATACGGAGAATAGCCATCAGCCACTTATTAATGGGCGCCGAGAGCGTGACCGTACGTGTTACTCTCACACACTCTCATTTGACGCGTGTCGCCCTGACAGCCATAACACAGAGCCCAACAAGAGAGCCATTGAGAGCAGTGGTCTTCCCTCCCACACTGCCTTTCATCTCCATGGCTTCTTTGAAGAAAGACATCGACCGTATTAAAGGCCCGTGGAGCCCCGAGGAAGATGAAGCTTTGCAGAGACTCGTCCAGATTTACGGTCCTAGAAACTGGTCTCTGATCAGCAAGTCCATTCCTGGTCGATCCGGCAAGTCCTGCCGCTTGCGGTGGTGCAACCAGCTCTCTCCCAACGTCGAGCGCCGGCCTTTCACGCCCGAGGAGGACGAAACCATCATCAGAGCACACGCTAGGTTTGGCAACAAGTGGGCCACAATCGCTCGCTTGCTCCACGGTCGCACAGACAACGCCATAAAAAACCACTGGAATTCCACTCTCAAGAGGAAATGCTCCGCCATCACCGATCCTTGCAATCCCGAAACCGACGATCATCAGCCTCTTAAAAGATCTGCCAGCGTCGGTGCCGCCCCAACCGTCTCCGGATTGTACTTGAGCCCGAGTAGCCCATCCGGATCCGATTTGAGCGATACCAGTTTGCCCGCTATGTCTCCCACGCGGGTTTACAGACCCGTTGCTAGGAACGCCGCCCCAATCCCCGGTGCCCAACAACCGGAAGATGCCACTTCGGTTCATGATCCACCGACATCACTATGCCTGTCACTGCCTGGATCCGATTCACTCGAGGCCTCCAACCATGGATCCGGATCGAATCTGTCTGTCAGCCCGACCCAGTTACTGCCAAGTCCGCCATCGCCAGCGGCTGCCGTACCAGCTGTAGGAGCATCAATACAGCAAGTGCGTTTCTCAGCTCCTACCAGTCAGAGACGTGATCAGTTAGGATGGGAGAAACAATTTTTCAGCGCCGAGTTTTTGGCGGTTATGCAAGAGATGATAAAGAAGGAAGTGAGGAATTATATGTCTGGGGTAGAGCCGAATGGTGTGTGTATTCAGACGGAAGCCATTGGAAACGCTGTGATGAAGAGCATAGGAATGGGCAGGGTCGAGTGA	1140	0.5421	MKKGIRRIAISHLLMGAESVTVRVTLTHSHLTRVALTAITQSPTREPLRAVVFPPTLPFISMASLKKDIDRIKGPWSPEEDEALQRLVQIYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPNVERRPFTPEEDETIIRAHARFGNKWATIARLLHGRTDNAIKNHWNSTLKRKCSAITDPCNPETDDHQPLKRSASVGAAPTVSGLYLSPSSPSGSDLSDTSLPAMSPTRVYRPVARNAAPIPGAQQPEDATSVHDPPTSLCLSLPGSDSLEASNHGSGSNLSVSPTQLLPSPPSPAAAVPAVGASIQQVRFSAPTSQRRDQLGWEKQFFSAEFLAVMQEMIKKEVRNYMSGVEPNGVCIQTEAIGNAVMKSIGMGRVE	379

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco05g1967	379	FunFam	MYB transcription factor	73	124	-	-
	Acco05g1967	379	CDD	SANT	75	117	IPR001005	-
	Acco05g1967	379	PANTHER	MYB PROTEIN-RELATED	73	233	-	-
	Acco05g1967	379	Gene3D	-	126	195	-	-
	Acco05g1967	379	Pfam	Myb-like DNA-binding domain	76	134	-	-
	Acco05g1967	379	MobiDBLite	consensus disorder prediction	205	226	-	-
	Acco05g1967	379	SUPERFAMILY	Homeodomain-like	70	166	IPR009057	-
	Acco05g1967	379	CDD	SANT	127	170	IPR001005	-
	Acco05g1967	379	FunFam	Transcription factor MYB44	127	173	-	-
	Acco05g1967	379	Gene3D	-	72	124	-	-
	Acco05g1967	379	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	68	123	IPR017930	-
	Acco05g1967	379	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	125	174	IPR017930	-
	Acco05g1967	379	MobiDBLite	consensus disorder prediction	252	288	-	-
	Acco05g1967	379	SMART	sant	72	121	IPR001005	-
	Acco05g1967	379	SMART	sant	124	172	IPR001005	-
	Acco05g1967	379	MobiDBLite	consensus disorder prediction	204	226	-	-
	Acco05g1967	379	ProSiteProfiles	Myb-like domain profile.	120	170	IPR001005	-
	Acco05g1967	379	ProSiteProfiles	Myb-like domain profile.	68	119	IPR001005	-
	Acco05g1967	379	MobiDBLite	consensus disorder prediction	241	298	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g1967	Acco-ChrAcco05	36031124	36032502	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g1967	70	379	MYB Transcription Factor Family	AT5G67300	52.812	1.36e-96	288

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Acco05g1967		Myb_DNA-bind_6	1.7e-17	CL0123