Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1944 ATGCAGGTGCAGCATCCGAACCCCTTGTCGGCTCCCAATGGCGTGGCGCCGACTCCGACTGTAAACCAATTCCCCGGTGCATCCTTGTACGTTGGGGATCTTGACCTGGACGTGACTGATGCCCAGCTCTACGATTTCTTCAACCGGCTGGGACAAGTTATGTCTGTTCGAGTTTGCAGGGATGTCACCAGCCACCGATCCCTTGGTTACGGTTATGTCAATTACAGTAATACTCAGGATGCGGCCCGAGCAGTAGATGAACTGAATTTCATGCCTCTGAACAACAAGCCCATCAGGATCATGTATTCCAATCGGGATCCTAGTAGCCGGAAGAGTGGAGCAGCGAATATATTTATCAAGAATTTGGATAAGACAATTGACCACAAGGCTTTACACGAGACTTTTTCTACTTTTGGGAATATTCTTTCTTGCAAACTAGCAACAGATGTATCTGGCCAGTCCAAAGGATATGGATTTGTGCAATTTGACAAAGAAGAATCTGCGCAAAATGCGATTGACAAGTTAAATGGCATGCTTTTAAATGATAAACAGGTCTATGTAGGGCATTTTCTGCGAAAGGAAGATAGAGAGAGTGTTTCTAACAAGACAAAGTTCAATAATGTCTATGTGAAAAACCTGTCAGAGTCAATGACAGATGAAGATTTGAAGGAAGTTTTTGGAGAATATGGGACCATTACTAGTGCTGTTATAATGAGAGATGCAGATGGTAAATCAAAATGTTTTGGTTTTGTCAATTTTGAAAATGCAGATGATGCTGCTAAAGCTGTTGAGGCACTTAACGGAAAGAAGTTTGATAATAACGAGTGGTATGTTGGAAAAGCTCAAAAAAAATCTGAAAGAGAGCTTGAGTTGAAAGGACGATTTGAGGAGAGTATGAAAGAAGCAGTTGACAAACATCAAGGGATGAACTTGTATGTCAAGAATCTGGATGATACCATCACTGATGAGAAATTGAAGGAAGTATTCTCTGGATTTGGTACCATAGTTTCTTGCAAGGTTATGAAAGACCAAAATGGAATGAGCAGGGGATCAGGATTTGTTTCCTTCTCAGCTCCTGAAGAAGCCTCTCGAGCTCTTGCAGAGATGAATAGTAAAATGGTTGCCGGCAAACCTCTGTATGTTGCATATGCTCAAAGAAAAGAAGACAGAAGAGCAAGATTACAGGCACAATTCTCACAAATGAGGCCTGTTCCCTTGGTGCCTTCTGTTGGTCCACGCATGCCGATGTATCCTCCTGGTGCTCCAGGTCTGGGACAACAATTTTTGTATGGGCAAGCTCCTCCTGCCATCATTCCTCCACAAGCTGGGTTTGGTTATCAGCAGCAACTCGTTCCTGGGATGAGGCCTGGTGGTGCTCCAATGCCAAACTTTTTTGTCCCAATGGTCCAGCAGGGTCAACAAGGTCCACGTCCTGGGGGACGCCGTGGAGCAGGTCCTTTGCAACAATCCCAGCAGCCAATGCCTCTGGTGCAGCAGCAGATGCTTCCAAGGGGACGTGCCTATCGTTACCCTCCTGGTCGCAACATGCAAGATGTTCCAATGCCAGGAGGAGCTGGTGGAATGCTTTCTGCCCCTTATGACATGAGTGGTTTGCCAATCCGGGATGCTGCTGGGCAACCATTGCCCAGGCAGGCATTGGCTACAGCCCTCGCAAATTCTCCGCCTGAACAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCTCTAGTAGAACAGCTGGAGCATGATGCCGCAGCTAAGGTAACGGGCATGCTTTTGGAGATGGACCAGCCTGAGGTATTGCATCTTATCGAATCGCCTGAAGCTCTCAAGGCTAAAGTAGCTGAGGCCTTGGAGGTTTTGAGAAATGTTTCTCAGCAAGTTAGCAGCCCAACTAATCAATTGGCCTCGCTCTCTCTTAATGACAATCTAGTTTCTTAG 1941 0.4601 MQVQHPNPLSAPNGVAPTPTVNQFPGASLYVGDLDLDVTDAQLYDFFNRLGQVMSVRVCRDVTSHRSLGYGYVNYSNTQDAARAVDELNFMPLNNKPIRIMYSNRDPSSRKSGAANIFIKNLDKTIDHKALHETFSTFGNILSCKLATDVSGQSKGYGFVQFDKEESAQNAIDKLNGMLLNDKQVYVGHFLRKEDRESVSNKTKFNNVYVKNLSESMTDEDLKEVFGEYGTITSAVIMRDADGKSKCFGFVNFENADDAAKAVEALNGKKFDNNEWYVGKAQKKSERELELKGRFEESMKEAVDKHQGMNLYVKNLDDTITDEKLKEVFSGFGTIVSCKVMKDQNGMSRGSGFVSFSAPEEASRALAEMNSKMVAGKPLYVAYAQRKEDRRARLQAQFSQMRPVPLVPSVGPRMPMYPPGAPGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGPRPGGRRGAGPLQQSQQPMPLVQQQMLPRGRAYRYPPGRNMQDVPMPGGAGGMLSAPYDMSGLPIRDAAGQPLPRQALATALANSPPEQQRTMLGEALYPLVEQLEHDAAAKVTGMLLEMDQPEVLHLIESPEALKAKVAEALEVLRNVSQQVSSPTNQLASLSLNDNLVS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1944 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 283 IPR000504 GO:0003723
Acco05g1944 646 Gene3D - 292 394 IPR012677 -
Acco05g1944 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Acco05g1944 646 SUPERFAMILY RNA-binding domain, RBD 206 389 IPR035979 GO:0003676
Acco05g1944 646 FunFam Polyadenylate-binding protein 196 291 - -
Acco05g1944 646 FunFam Polyadenylate-binding protein 545 627 - -
Acco05g1944 646 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 27 622 IPR006515 GO:0003723
Acco05g1944 646 SUPERFAMILY RNA-binding domain, RBD 26 196 IPR035979 GO:0003676
Acco05g1944 646 SMART poly_2 561 624 IPR002004 GO:0003723
Acco05g1944 646 Gene3D - 196 291 IPR012677 -
Acco05g1944 646 Gene3D - 10 107 IPR012677 -
Acco05g1944 646 Gene3D - 108 195 IPR012677 -
Acco05g1944 646 Pfam Poly-adenylate binding protein, unique domain 557 621 IPR002004 GO:0003723
Acco05g1944 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Acco05g1944 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Acco05g1944 646 SUPERFAMILY PABC (PABP) domain 491 632 IPR036053 GO:0003723
Acco05g1944 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Acco05g1944 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Acco05g1944 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 276 IPR000504 GO:0003723
Acco05g1944 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 99 IPR000504 GO:0003723
Acco05g1944 646 CDD RRM4_I_PABPs 308 386 - -
Acco05g1944 646 SMART rrm1_1 310 382 IPR000504 GO:0003723
Acco05g1944 646 SMART rrm1_1 28 101 IPR000504 GO:0003723
Acco05g1944 646 SMART rrm1_1 207 279 IPR000504 GO:0003723
Acco05g1944 646 SMART rrm1_1 116 188 IPR000504 GO:0003723
Acco05g1944 646 PANTHER RNA BINDING PROTEIN 27 89 - -
Acco05g1944 646 FunFam Polyadenylate-binding protein 292 397 - -
Acco05g1944 646 CDD RRM2_I_PABPs 113 189 IPR045305 -
Acco05g1944 646 FunFam Polyadenylate-binding protein 9 110 - -
Acco05g1944 646 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 549 626 IPR002004 GO:0003723
Acco05g1944 646 MobiDBLite consensus disorder prediction 471 491 - -
Acco05g1944 646 Gene3D - 546 628 - -
Acco05g1944 646 SMART rrm2_1 28 101 IPR003954 GO:0003676
Acco05g1944 646 SMART rrm2_1 207 279 IPR003954 GO:0003676
Acco05g1944 646 SMART rrm2_1 116 188 IPR003954 GO:0003676
Acco05g1944 646 SMART rrm2_1 310 382 IPR003954 GO:0003676
Acco05g1944 646 CDD RRM3_I_PABPs 205 284 - -
Acco05g1944 646 FunFam Polyadenylate-binding protein 116 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1944 Acco-ChrAcco05 35793685 35797217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1944 1 641 Eukaryotic Initiation Factors Gene Family AT4G34110 66.357 0.0 841