Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1939 ATGCAAGGTCAGAGGGGTGCAATTGGTTCCTTGCCTGAAACCTTAGAATTCAATTGTGGATCCACATCAAGTAATCCTACTGTGGACCAATCAATTTGCTGGACTAATATGCGGAATCCTGCTGATAATGTTAGTGATATACCAGAGTATGTACTTCCTTTGAGCAATATGAACCCACCTTATATGAATCCTATAAGCCATGAATGGCAGAATTCAAGTGGATGGAGCTTAGGTGAGCCCAGTTCTAGTAACACCCAGAGTGAAATCAACAATAATCAGCAGAAAAGAGATCTTGGATGGACATCTCCAATCAGTGCTAATGCTGCAGCTGGTCCAAGAGCGGAAGGAATGCGCTTTGAACCAACTATTGTTTTTTCGGCTGACAATGTCAATTCCAGTCCTATGTATATGCACAACTCCAATTCTCACATGTCACCAAATCTCAACTTAAATGCTGACTTGGCAGATGGTGGTGGTGGAAACAGCCAGCATTTGGAGCACCCTATCTTGCAGAAATCTAGTGGATCAGGAAATGATCATGTTCTTCCTGGCATTGTTTCTGGTCCCATTCCTCCTCCTCCTGGAAATAACAGCTTTGTGCCAGAAGGCACTGATGCTAGGCCTGGATGTTCTGTAGATGCGCATCATGCGTCCTGTAAAAGAAAGGCCATTGAAGAAAATGTTGGACCATCTTTGGATGGTGGAAGTTCTAGTTCTAGTCAGCATACAGAAAGCAGTGCTTGGAACACTCTTCCAACTCAGGATAATGCTAGGAGCAGTTTATGTAGGTCTGCTTCATCTGAACTGATAAATGCTAGACTTGGGCTGGGAATGGGGGATGAAGCACCTGAAAACCTTCCTGATTCAAATGATGCAGGGAGCACAGAAAGCTTCCGCAGGAATCTCCGTTTGAGGATAAGTCCTTCAAGCCAACAAAATTCAATTCCTCCCCCTGTGTTCTCTTCTGGGAGTGGGATTAGGCATTCTAGTATGTCAACCTCTTCAATGTCACAAAGGTTCCCGCCTGTTGATAACCCCTTGGACTTGAGGGCAGCACCAAGGGTAGATAATATAATTCCTCAAAGCCAGCCCCTTGTGATCCATGTTCCTACTTTACCAAGGAATATGCAATCATTGAGATGGAATGGTAGTTCTAGCTCAAGCAACAGCCAATCATCAAGCACAATCCTTTGTGCAGATAGGGATAACCAGCCACGGGAAGAATCAAGCTCAAGAAGTATTTCTAGAAACATTTTTGATCGCCCTGTGTTTGTACCTGCAACTGATTTAAGAAATCTTGTTCGAAATCCAACAGTTAGAGCTTCAGGTAGTGCAAATTTAAGCATGTCTGGAAATGTTGCTTCCTCTTCACGGGCCGGATCAAATTCAGCTATCAACCAATCATCTACCTCAACGTGGGTTCCTCGTCCTAATCCTCCACAGTATCCACGTAGATTGTCTGAATATGTTCGTCGATCTTTGTTTTCTCCTCCTTCTGAGACCGCTGGAAGTCAAAATCCAAGCAATAATTCTTCTTTGCACTCTGGTCCTACTTCTGCATCTGAAGCAAGGGTGCCATCATCTGTGGCTGGTGTCCAAGGACATCATCAATCACACCCAAGATCTTTGTGGATGGAAAGGCAAGGTGATACTGAATTTGGAATTCCATATTCATTGCGAAGTTTGGCTGCTGCTGGTGAAGGAAGTAATAGTAGACTAGTATCTGAGCTTCGTAATGTTTTGGGCCTCATGCGAAGGGGTGGAAGCCTGCGATTTGAGGATGTTATGATTCTTGACCAATCAGTCTTTTCTGGAGTGGCTGATCTTCATGATCGACACAGGGATATGCGCCTTGATGTTGATAACATGTCATACGAGGAGCTGCTTGCTCTGGAAGAGCGAATTGGAAATGTGAGTACTGGATTGAGTGAAGAAACCGTAATGAAACTTTTGAAACAGAAGAAGTATTCAGTTGAAACAGGATCCAAGCTTGAGGCAGAACCGTGCTGTGTCTGTCAGGAGGAGTACAACGACGGAGACGATATTGGAATTCTTGATTGTGGGCATGACTTCCACAAAGACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACAGGCCTGTCGTCATGA 2151 0.4417 MQGQRGAIGSLPETLEFNCGSTSSNPTVDQSICWTNMRNPADNVSDIPEYVLPLSNMNPPYMNPISHEWQNSSGWSLGEPSSSNTQSEINNNQQKRDLGWTSPISANAAAGPRAEGMRFEPTIVFSADNVNSSPMYMHNSNSHMSPNLNLNADLADGGGGNSQHLEHPILQKSSGSGNDHVLPGIVSGPIPPPPGNNSFVPEGTDARPGCSVDAHHASCKRKAIEENVGPSLDGGSSSSSQHTESSAWNTLPTQDNARSSLCRSASSELINARLGLGMGDEAPENLPDSNDAGSTESFRRNLRLRISPSSQQNSIPPPVFSSGSGIRHSSMSTSSMSQRFPPVDNPLDLRAAPRVDNIIPQSQPLVIHVPTLPRNMQSLRWNGSSSSSNSQSSSTILCADRDNQPREESSSRSISRNIFDRPVFVPATDLRNLVRNPTVRASGSANLSMSGNVASSSRAGSNSAINQSSTSTWVPRPNPPQYPRRLSEYVRRSLFSPPSETAGSQNPSNNSSLHSGPTSASEARVPSSVAGVQGHHQSHPRSLWMERQGDTEFGIPYSLRSLAAAGEGSNSRLVSELRNVLGLMRRGGSLRFEDVMILDQSVFSGVADLHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVMKLLKQKKYSVETGSKLEAEPCCVCQEEYNDGDDIGILDCGHDFHKDCIKQWLMHKNLCPICKTTGLSS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1939 716 MobiDBLite consensus disorder prediction 442 475 - -
Acco05g1939 716 Pfam Ring finger domain 669 710 IPR001841 -
Acco05g1939 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 713 IPR013083 -
Acco05g1939 716 MobiDBLite consensus disorder prediction 496 544 - -
Acco05g1939 716 FunFam E3 ubiquitin-protein ligase MBR2 637 714 - -
Acco05g1939 716 MobiDBLite consensus disorder prediction 72 104 - -
Acco05g1939 716 ProSiteProfiles Zinc finger RING-type profile. 669 710 IPR001841 -
Acco05g1939 716 MobiDBLite consensus disorder prediction 442 484 - -
Acco05g1939 716 MobiDBLite consensus disorder prediction 193 212 - -
Acco05g1939 716 MobiDBLite consensus disorder prediction 227 262 - -
Acco05g1939 716 SUPERFAMILY RING/U-box 668 712 - -
Acco05g1939 716 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 215 715 IPR045191 GO:0061630
Acco05g1939 716 MobiDBLite consensus disorder prediction 72 101 - -
Acco05g1939 716 MobiDBLite consensus disorder prediction 497 535 - -
Acco05g1939 716 MobiDBLite consensus disorder prediction 378 400 - -
Acco05g1939 716 MobiDBLite consensus disorder prediction 305 341 - -
Acco05g1939 716 MobiDBLite consensus disorder prediction 305 348 - -
Acco05g1939 716 MobiDBLite consensus disorder prediction 378 414 - -
Acco05g1939 716 MobiDBLite consensus disorder prediction 231 262 - -
Acco05g1939 716 SMART ring_2 669 709 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1939 Acco-ChrAcco05 35745912 35749428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1939 217 716 C3H Transcription Factor Family AT2G15530 39.272 4.00e-87 287
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1939 05 35745912 35749428 Acco10g1730 10 30550490 30553743 CCT
Acco05g1939 05 35745912 35749428 Acco05g1939 05 35745912 35749428 ECH