Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1938 ATGGCCGATATGTACGGTACTCCTCCCTCTCTGCTCACCGCCTCCGCCATGCCCTCTGATTCCGACGATTTCTCCACCTTCTTCTCCCACCTCCTCCATAACTCGACTTCCGCTTCCATCCTTTCCAAAGCCAAAACCTCACCGCCTCCGTGGCTCCCTCCGCCGGTGGGAACCGCCGGGATAGGTCAGTCGAGCTCGGACTCACCTCACAAGAATGGCAAGCCCGTTGATTATTCCGGTGCAGTTTCTGATCCTTTCGAATTTTCTGATCCCTATGCTTACGTTCCGGCTGATGTGAAAGAGGCTGCTGGAAATGAGTTCTTTCCCGCTGGTATCGACGATTCTGATGAAAATACTACTTCTTTCAAAGAACTTAGGATTTCGCCAGAGATTGATCCCGGCGATTTCATTTGTGCCCTCGAGAAGAATGGTGAGTCGTCGCAGACAAAGCGATTCCCAGGACGTACTTCCTCAAAGAGGAGCAGAGCAGCAGAGGTTCATAATATGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAGGCCTTACAGAACTTAATTCCAAATTCTAACAAGACGGATAAAGCTTCAATGCTGGACGAAGCGATTGAATATTTGAAGCAACTTCAGTTTCAAGTGCAAATGTTAGTGATGAGGAACGGTTTGAGCTTGCATCCAATGTGTTTACCAGGAGGACTGCAATCTATGACACTGCCTCAGACTGGGTTGAATTTTGACGACTCCGATATATATCACAATTCTTCTCGTGGAATTGCCTCATCGTCCCTGAATGCTGACTTGGTGCCCCCACCAGACTTGAGACTTTCAAAGCATTGCAGCATCTCTGATCAAACTGTGATCATCCCCTCCATGGCCAACCCAGATACCTCATCAGGTTTCAGATTTCACATTGGACAATTCAACCCTTCTACGTCATCCAAGGATGCACTCTCTGATGGCGCACAACATCTCCATTTGGACGCCACAAAGATTGAAAAGAGCGCGTCTTCAGATGTCTCCTAA 1029 0.4791 MADMYGTPPSLLTASAMPSDSDDFSTFFSHLLHNSTSASILSKAKTSPPPWLPPPVGTAGIGQSSSDSPHKNGKPVDYSGAVSDPFEFSDPYAYVPADVKEAAGNEFFPAGIDDSDENTTSFKELRISPEIDPGDFICALEKNGESSQTKRFPGRTSSKRSRAAEVHNMSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQFQVQMLVMRNGLSLHPMCLPGGLQSMTLPQTGLNFDDSDIYHNSSRGIASSSLNADLVPPPDLRLSKHCSISDQTVIIPSMANPDTSSGFRFHIGQFNPSTSSKDALSDGAQHLHLDATKIEKSASSDVS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1938 342 Pfam Helix-loop-helix DNA-binding domain 166 212 IPR011598 GO:0046983
Acco05g1938 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 222 IPR036638 GO:0046983
Acco05g1938 342 Gene3D - 157 220 IPR036638 GO:0046983
Acco05g1938 342 Coils Coil 168 188 - -
Acco05g1938 342 FunFam Basic helix-loop-helix transcription factor 157 220 - -
Acco05g1938 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Acco05g1938 342 MobiDBLite consensus disorder prediction 144 176 - -
Acco05g1938 342 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 17 311 IPR031066 -
Acco05g1938 342 CDD bHLH_AtPIF_like 162 224 IPR047265 -
Acco05g1938 342 SMART finulus 168 217 IPR011598 GO:0046983
Acco05g1938 342 MobiDBLite consensus disorder prediction 158 176 - -
Acco05g1938 342 MobiDBLite consensus disorder prediction 42 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1938 Acco-ChrAcco05 35739644 35741950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1938 162 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 51.786 3.95e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco05g1938 HLH 1.7e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1938 05 35739644 35741950 Acco05g1938 05 35739644 35741950 ECH