Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1930 ATGAACAGCGAAGATCTGTTGAAGTCATCCACTTTGAACCACCAGGGCAATCAGATGGAGACGATGATGATGCAACTTCCTGAATTCTCCGGAGCATACAGCAACAACTACGTCGTTTCCGACGACTTTGCACTGCCTGAGATCTCCCCGACCGCTACTAGGACGACGGACACCGACATACACGGAACTATGCTGCATTTTTTGGACAACTCGCCTGTGACGTCGCCGTCATCATTCACAAGCTTACAGTCTGCTACAATTTCCTTCACTAACCCTACTCCGGTGCTACAAGAGCGAGATCCACCGCCCTGCGGAGGAAACGCGAGCGGCAGAGCGGCATCGGAGAAAGGGATGTCAATGGCGGCGATGAGGGAGATGATATTCAGGATAGCGGTGATGCAGCCAATACACATAGACCCGGAGTCAGTGAAGCCACCGAAGCGGAGGAACGTGAAGATCTCGAAGGATCCTCAGAGCGTGGCCGCTCGCCATCGCAGAGAGAGGATCAGCGAGAGAATAAGGATACTGCAGAGGCTGGTTCCGGGAGGGACTAAGATGGACACAGCTTCCATGTTAGACGAAGCCATTCACTATGTGAAGTTTCTCAAGACTCAGGTTCAGTCACTCGAACGGGTTGCAGCCAGTAAGCCTACAAGGATAGGATTCCCTGCGGCCATGTCCACTGCTGCATCTTCCTCCTCCTCTTATCTTCCGATCCCATCAAAACCTTACCAACTTCCTCCTCAAAATGTTCCGCATTACGGACATGATGCATAA 777 0.5199 MNSEDLLKSSTLNHQGNQMETMMMQLPEFSGAYSNNYVVSDDFALPEISPTATRTTDTDIHGTMLHFLDNSPVTSPSSFTSLQSATISFTNPTPVLQERDPPPCGGNASGRAASEKGMSMAAMREMIFRIAVMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERVAASKPTRIGFPAAMSTAASSSSSYLPIPSKPYQLPPQNVPHYGHDA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1930 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Acco05g1930 258 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 33 248 IPR045843 GO:0003700|GO:0006355
Acco05g1930 258 FunFam BHLH transcription factor 156 219 - -
Acco05g1930 258 Gene3D - 152 219 IPR036638 GO:0046983
Acco05g1930 258 SMART finulus 159 208 IPR011598 GO:0046983
Acco05g1930 258 MobiDBLite consensus disorder prediction 92 113 - -
Acco05g1930 258 Pfam Helix-loop-helix DNA-binding domain 163 202 IPR011598 GO:0046983
Acco05g1930 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 215 IPR036638 GO:0046983
Acco05g1930 258 MobiDBLite consensus disorder prediction 233 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1930 Acco-ChrAcco05 35680968 35681744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1930 101 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 80.702 5.72e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco05g1930 HLH 1.6e-06 No_clan