Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1890 ATGTCAAGCAAAGCAATAACTCTCCTTATCTTGTTTCTTAATATCTCCTTGTTTCCATCCGTCAATACTCTGAACCAGGAAGGTCTATCCCTACTTTCATGGCTTTCAACCTTCAATTCCTCTGATTCTGCTACTTCCTTCTTCTCTTCATGGAATCCAACCGACAAGAGTCCTTGCAAATGGGATTATATAAGATGTTCCAAAGATTGGTTTGTTTCAGATATTATAATAACATCTATTAATCTTCGTAGCAGCTTCCCAACGCAGCTCCTCTCTTTTGGTCACCTCACTACTCTGGTCATCTCAAATGGAAATCTTACTGGTGAGATTCCAAGTTCAGTAAGTAACTTGTCGTCTCTGGTTTCTTTGGACCTCAGCTTCAATGCTTTATCAGGAACCATTCCTGCAGAAATAGGAAAGGTATCTAATCTGCAGTGGTTGAAGTTAAATTCAAACTCCTTACATGGTGAGATTCCAACAGAAATTGGGAACTGTTCCAAGCTTCGTCAGCTGGAACTGTTTGACAACCAGCTATCTGGCAAGATTCCTGGAGAGATAGGCCATTTGAAAGATCTAGAGATGTTTCGGGCAGGTGGAAATCAGGGAATCCACGGTGAAATTCCAATGCAGATTTCAAACTGCAAAGCTCTCACTTTGCTGGGTCTTGCAGATACTGGGATTTCAGGGGAGATTCCATCAAGTATAGGAGAACTTAAGAATCTCAAGACGCTTTCTGTCTACACAGCGAACCTCACAGGTCATATCCCACCAGAGATTCATAATTGTTCAGCTTTGGAGAATTTGTTTCTGTATGAAAATCAGCTTTCTGGTGACATTCCTTATGAATTGGGTTCCATGAAAAGCCTGAGGAGAGTAATGCTATGGCAGAACAATTTATCTGACACCATTCCAGAAAGTTTGGGGAACTGTACAAATCTGGTGGTTGTAGATTTTTCTTTGAATTCCTTGGAAGGTGAGCTCCCTGTGACTCTTAGAAATTTGCTCTTATTGGAGGAGCTTCTTCTCTCTGATAATAACATTTCTGGAGAAATACCTTCCTTTATTGGCAATTTTTCCAGACTGAAGCAGCTTGAATTAGATAACAATAGATTCTCTGGCGAGATTCCACCTGTTATGGGACGGCTGAAGGAACTGTCCTTGTTCTTTGCTTGGCAGAACCAACTCTATGGAAGCATACCAACAGAACTATCCAACTGTGAGAAACTTGAGGCACTTGATCTCTCACACAATTTCCTCACTGGGTCAATTCCAAGTTCTCTCTTTCATCTAGAGAACTTAACTCAACTATTGTTGATATCAAATCGACTTTCAGGTCAACTTCCACCAGATATTGGAAGCTGCACCAACTTGGTCAGGCTACGGATGGGATCAAACAACCTTTCTGGTCCAATTCCACCAGAAATAGGTCTTCTAAGCAGATTGAGCTTTCTTGAATTGTCAGATAATCTACTCAGTAGAGAAATTCCAGACCAGATTGGCAACTGCAATCAGCTACAAATGCTTGACTTGCACAAGAATAATCTGCAAGGAACAATTCCTTCCTCCTTTGAGTTCCTACTTGTTCTTAATGTCTTAGATCTCTCTACAAACAGAATAACTGGAAGTATTCCCCAAAAGTTGGGCAAGCTTACATCTTTAAATAAGTTAATAATCAGTGGCAACAGCATTACAGGTTTGATCCCTCAGTCACTGGGCCTTTGTAAGAATTTGCAGTTGCTGGATATTAGCAACAACAAAATCTCTGGTTCCATCCCAGATGAGATTGGCCAATTGCAAGGACTTGATATCCTCTTGAACTTGAGTTGGAATTCTCTAACAGGTCCTATTCCAGAGAGCTTCTCAAATCTCTCAAAACTTTCCAACTTGGACCTCTCCCACAACAAGCTAACAGGCAGACTCAGAATACTGGGTAGTCTTGACAATTTAGTGTCTTTGAATGTCTCCTACAATAGTTTTTCTGGTTCACTTCCAGATACAAAGTTCTTTCATGATCTCCCTGCTGCTGTGTTTGCTGGTAACCCTGAGCTTTGCATTAGCAGGTGTGACATGAATCGGAATCACCAAGGCATCAAGTCAGTAAGAAATGTTATTATTTACACTTTTCTTGGGGTTATTTTAACAGCTATGTTTGTTACTTTTGGAGTAATTTTTGCTCTGAGAATTCATGGGGTCACATTTGAGAGGAAATTTGATGAAGAAAGTGAAATGGAATGGACCTTTACTCCATTTCAAAAACTTAACTTCTCCATCAATGACATTATCACAAAGTTATCAGATTCAAACGTTGTAGGAAAGGGTTGCTCAGGGATTGTTTATCGAGTGGAGACTCCAACGAAACAGATAATTGCAGTGAAGAAGCTCTGGCCAATAAAGATTGACGAGCCACCAGAGAGGGATTTGTTCTCTGCAGAGGTTCAGACCTTGGGATCAATAAGGCATAAAAATATAGTCAGGCTGCTAGGATGCTGTAACAATGGAAGAACAAGATTGCTCCTATTTGATTTTATCAGCAATGGGAGTTTGTGTGGTTTGCTCCATGAAAAGAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTGGGGGCAGCTCATGGTTTAGAATATCTGCATCATGATTGTATACCTCCAATTGTCCATAGGGACATTAAGGCAAACAACATCTTGGTAGGACCGCAATTTGAAGCTTTCATTGCGGATTTTGGTCTTGCAAAACTGGTGAATTCCTCTGAGTGTTCAAAAGCCTCTGCCATAGTTGCAGGCTCTTATGGGTACATAGCTCCTGAATATGGATACAGCCTAAGGATCACAGAGAAGAGTGATGTGTACAGTTATGGTGTGGTGCTGCTGGAGGTTTTGACAGGGATGGAACCTACTGATACTAGGATTCCAGAGGGTGCCCACATTGTCACTTGGGTTAACAGGGAAATCAGAGAGAAGAAAAAGGACTTCACATCCATTCTTGACCAACAACTAGTATTGCAATGCGGTACTAGAACGCCAGAGATGCTTCAAGTCCTAGGGGTGGCTCTCTTATGTGTAAACCCATCCCCAGAAGAACGACCCACCATGAAAGATGTAACAGCAATGCTCAAGGAGATCAGACATGAAACTGACAATTTTGAGAAACCAAGTTTTCTCCAAAAAGGGGCAGTCCCCAATCCAAAAGTCGCAGTTCACTGTTCAAGTTTCTCCAGATCATGTGAACCACTGATAGAATCAACGTCCTCGTCATCTTCTTCCTAA 3270 0.4125 MSSKAITLLILFLNISLFPSVNTLNQEGLSLLSWLSTFNSSDSATSFFSSWNPTDKSPCKWDYIRCSKDWFVSDIIITSINLRSSFPTQLLSFGHLTTLVISNGNLTGEIPSSVSNLSSLVSLDLSFNALSGTIPAEIGKVSNLQWLKLNSNSLHGEIPTEIGNCSKLRQLELFDNQLSGKIPGEIGHLKDLEMFRAGGNQGIHGEIPMQISNCKALTLLGLADTGISGEIPSSIGELKNLKTLSVYTANLTGHIPPEIHNCSALENLFLYENQLSGDIPYELGSMKSLRRVMLWQNNLSDTIPESLGNCTNLVVVDFSLNSLEGELPVTLRNLLLLEELLLSDNNISGEIPSFIGNFSRLKQLELDNNRFSGEIPPVMGRLKELSLFFAWQNQLYGSIPTELSNCEKLEALDLSHNFLTGSIPSSLFHLENLTQLLLISNRLSGQLPPDIGSCTNLVRLRMGSNNLSGPIPPEIGLLSRLSFLELSDNLLSREIPDQIGNCNQLQMLDLHKNNLQGTIPSSFEFLLVLNVLDLSTNRITGSIPQKLGKLTSLNKLIISGNSITGLIPQSLGLCKNLQLLDISNNKISGSIPDEIGQLQGLDILLNLSWNSLTGPIPESFSNLSKLSNLDLSHNKLTGRLRILGSLDNLVSLNVSYNSFSGSLPDTKFFHDLPAAVFAGNPELCISRCDMNRNHQGIKSVRNVIIYTFLGVILTAMFVTFGVIFALRIHGVTFERKFDEESEMEWTFTPFQKLNFSINDIITKLSDSNVVGKGCSGIVYRVETPTKQIIAVKKLWPIKIDEPPERDLFSAEVQTLGSIRHKNIVRLLGCCNNGRTRLLLFDFISNGSLCGLLHEKRLFLDWDARYKIILGAAHGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFIADFGLAKLVNSSECSKASAIVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTDTRIPEGAHIVTWVNREIREKKKDFTSILDQQLVLQCGTRTPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHETDNFEKPSFLQKGAVPNPKVAVHCSSFSRSCEPLIESTSSSSSS 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1890 1089 PANTHER UNNAMED PRODUCT 294 968 - -
Acco05g1890 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 886 898 IPR008271 GO:0004672|GO:0006468
Acco05g1890 1089 SUPERFAMILY Protein kinase-like (PK-like) 742 1039 IPR011009 -
Acco05g1890 1089 SMART LRR_typ_2 334 358 IPR003591 -
Acco05g1890 1089 SMART LRR_typ_2 646 679 IPR003591 -
Acco05g1890 1089 SMART LRR_typ_2 286 310 IPR003591 -
Acco05g1890 1089 SMART LRR_typ_2 117 140 IPR003591 -
Acco05g1890 1089 SMART LRR_typ_2 141 165 IPR003591 -
Acco05g1890 1089 SMART LRR_typ_2 550 573 IPR003591 -
Acco05g1890 1089 SMART LRR_typ_2 623 645 IPR003591 -
Acco05g1890 1089 SMART LRR_typ_2 478 502 IPR003591 -
Acco05g1890 1089 SMART LRR_typ_2 574 598 IPR003591 -
Acco05g1890 1089 SMART LRR_typ_2 430 454 IPR003591 -
Acco05g1890 1089 PRINTS Leucine-rich repeat signature 120 133 - -
Acco05g1890 1089 PRINTS Leucine-rich repeat signature 623 636 - -
Acco05g1890 1089 ProSiteProfiles Protein kinase domain profile. 764 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco05g1890 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 408 692 - -
Acco05g1890 1089 Gene3D Ribonuclease Inhibitor 280 380 IPR032675 -
Acco05g1890 1089 Pfam Leucine Rich Repeat 408 430 IPR001611 GO:0005515
Acco05g1890 1089 Pfam Leucine Rich Repeat 605 623 IPR001611 GO:0005515
Acco05g1890 1089 ProSitePatterns Protein kinases ATP-binding region signature. 770 798 IPR017441 GO:0005524
Acco05g1890 1089 Gene3D Transferase(Phosphotransferase) domain 1 843 1057 - -
Acco05g1890 1089 SUPERFAMILY L domain-like 42 395 - -
Acco05g1890 1089 SUPERFAMILY RNI-like 294 664 - -
Acco05g1890 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 326 - -
Acco05g1890 1089 ProSiteProfiles Leucine-rich repeat profile. 408 430 IPR001611 GO:0005515
Acco05g1890 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 843 1057 - -
Acco05g1890 1089 SMART serkin_6 764 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco05g1890 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 200 - -
Acco05g1890 1089 ProSiteProfiles Leucine-rich repeat profile. 576 598 IPR001611 GO:0005515
Acco05g1890 1089 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Acco05g1890 1089 Pfam Protein kinase domain 767 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco05g1890 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 740 842 - -
Acco05g1890 1089 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Acco05g1890 1089 Pfam Leucine rich repeat 504 563 IPR001611 GO:0005515
Acco05g1890 1089 Gene3D Phosphorylase Kinase; domain 1 729 842 - -
Acco05g1890 1089 Gene3D Ribonuclease Inhibitor 181 279 IPR032675 -
Acco05g1890 1089 Gene3D Ribonuclease Inhibitor 391 693 IPR032675 -
Acco05g1890 1089 Pfam Leucine rich repeat N-terminal domain 25 67 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1890 Acco-ChrAcco05 35314516 35317946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1890 23 1044 Receptor kinase-like Gene Family AT5G56040 47.646 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Acco05g1890 Pkinase 1e-40 CL0016