LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g1880	ATGGAACAGAGTATCCTATGCAAATACACTGTCCACGAAAGTGTCACCAAGAAGTACACCAAGCCGGTGGCCGCTAACAAGGCTTCCGATGTTCACTGTCCCTTTGAGCCCAGGGTGGTACGGATATCTGTCACCGATCCAGATGCCACTGACTCCTCCAGCGACGACGAAGGAGAGTTCTGCTTCAGCCGTCAGAGAGTGAAGCGTTATGTGAACCAGGTCAACATCGAGCCGAGCTGTAAGAGCGCGGTGACTTCCAATCCGCGAAAGAGGGCCGCCGGAGAAACTCAAGCCTACCGGCGGCCGGTGAAGGTTTCTTCTACTAATAACGGAAGGAAGTTCAGAGGAGTACGACAAAGACCCTGGGGGAAATGGGCGGCGGAGATTCGGGATCCCGCTCGTCGTGTACGCGTGTGGTTGGGCACTTTCGACACTGCAGAGGAAGCAGCCATGGTTTATGATAATGCAGCGATTAAGATACGCGGACCAGACGCGTTGACAAACTTCGTTACCCCACCGCCGAGGGAAAAGCCGGAAGAAGCAGAACTGGCGGTGAAGCCGGAAATCAATGTGGTGGTGAAGTCGGAAGCATCGGGCTCCGGCTACGATTCTGGCGACGAATCACATCGTCTGCCATCTCCCACCTCCGTGCTGCAATTCAGAAGCAACTGCAGCGAAGAGGCCGAACCCCAGAAGGCAAGCGAACCGGAGAAAGAAAGTGAGGCGGAGACAGAGGTGGCCCAAGTGAAAGATGTGTTCCGGGAGTGTGAAGGCGAGACGAGTCAGTTAGACGAGAGGGCGGACTTGTTCGAGTTTGACATGCCAAATTGGGAGCAGGTGTTCGATTTCTCAACGGCAGAACCAGAATATTCATTACTGTTCGAAGAACCTCCTCCGTTCCTGGGGGAGACGGCGATGTTGGCAGAGGAAGATTTCAGGGTGGGGGATTTCTTGGTGGGGGATTCAGAGTTGGAGCTGGAGAAATCATTCTCGCCCTCGAACCTGTTGCAAATGGACGATTACTTCCAAGACATATGA	1038	0.5405	MEQSILCKYTVHESVTKKYTKPVAANKASDVHCPFEPRVVRISVTDPDATDSSSDDEGEFCFSRQRVKRYVNQVNIEPSCKSAVTSNPRKRAAGETQAYRRPVKVSSTNNGRKFRGVRQRPWGKWAAEIRDPARRVRVWLGTFDTAEEAAMVYDNAAIKIRGPDALTNFVTPPPREKPEEAELAVKPEINVVVKSEASGSGYDSGDESHRLPSPTSVLQFRSNCSEEAEPQKASEPEKESEAETEVAQVKDVFRECEGETSQLDERADLFEFDMPNWEQVFDFSTAEPEYSLLFEEPPPFLGETAMLAEEDFRVGDFLVGDSELELEKSFSPSNLLQMDDYFQDI	345

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco05g1880	345	MobiDBLite	consensus disorder prediction	221	244	-	-
	Acco05g1880	345	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	37	256	-	-
	Acco05g1880	345	FunFam	Ethylene-responsive transcription factor 2	112	171	-	-
	Acco05g1880	345	CDD	AP2	113	169	IPR001471	GO:0003700\|GO:0006355
	Acco05g1880	345	MobiDBLite	consensus disorder prediction	228	244	-	-
	Acco05g1880	345	ProSiteProfiles	AP2/ERF domain profile.	113	170	IPR001471	GO:0003700\|GO:0006355
	Acco05g1880	345	Gene3D	AP2/ERF domain	112	171	IPR036955	GO:0003700\|GO:0006355
	Acco05g1880	345	SUPERFAMILY	DNA-binding domain	113	170	IPR016177	GO:0003677
	Acco05g1880	345	PRINTS	Ethylene responsive element binding protein signature	114	125	IPR001471	GO:0003700\|GO:0006355
	Acco05g1880	345	PRINTS	Ethylene responsive element binding protein signature	136	152	IPR001471	GO:0003700\|GO:0006355
	Acco05g1880	345	SMART	rav1_2	113	176	IPR001471	GO:0003700\|GO:0006355
	Acco05g1880	345	Pfam	AP2 domain	113	162	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g1880	Acco-ChrAcco05	35230524	35231561	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g1880	7	227	AP2-EREBP Transcription Factor Family	AT4G27950	51.770	3.16e-63	202

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco05g1880		AP2	4e-14	CL0081