Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1875 ATGGACGACGGCTTCTCTGATATTTTCGAAGACAGAGACTTAGACTTGGGTGGAGACGACCTGCTTGCTATTTTGGACTCCCTCGAGGACTTCACCAATTTCCCTCCCGTTGAAGAATCCCTTGCCGTTACCTCAAAAGAGAATAATAACGACGAAACCACAAGCCCTCTCCAATCTGATCATTCACTATCCACGACCAGAAGCAACAAGAGACAGAAGCTTTCAGAGTCATCATCTGAAGAACCTAAGATATCTCATATCACTGTGGAGCGCAACCGAAGAAAGCAAATGAACGAGCACTTGTCCGTCTTGAGGTCCCTCATGCCTTGCTTCTATGTCAAACGAGGTGATCAAGCATCAATAATAGGAGGAGTGGTAGAGTACATCAACGAGTTGCATCAACTTCTGCAATCCCTAGAGGCCAAGAAACAGAGAAAGGTGTATAATGAAGTTCTGAGCCCTAGGCTAGTGTCAAGTCCAAGGCTTTCGCCGAGAGTGATGCCGCCGGTGAGCCCTAGGCTAAACCTACCCATTAGCCCAGGCACACCACAGCCAGGTAGCCCCTACAAGCCCCAACAACCCAGACTGTCCACCTCTCTAGAACCTTCTCCCACATCTTCTGCTTCTTCCTCCATCAACGACAATATCAACGACCTCGTCGCAAACTCCAAGTCCTCCATCGCCGATGTCGAGGTTAAGTTCTCAGGGCCCCACGTACTCTTGAAAACCCTATCTCCTCCAATCCCTGGACAAGCGACAAAAATCATCTCCGCCCTTGAAGATCTGGCCCTCGAAATCCTTCAGGTCACCATCACCACTGCTGAACAAGGCGTACTTAATTCATTCACCATCAAGATTGGAGTAGAATGTCAGCTCAGTGCTGAGGATCTAGCTCAACAGGTCCAGCAAACTTTCTCGCCACATGGGATTCCCTCGTGA 939 0.4909 MDDGFSDIFEDRDLDLGGDDLLAILDSLEDFTNFPPVEESLAVTSKENNNDETTSPLQSDHSLSTTRSNKRQKLSESSSEEPKISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVEYINELHQLLQSLEAKKQRKVYNEVLSPRLVSSPRLSPRVMPPVSPRLNLPISPGTPQPGSPYKPQQPRLSTSLEPSPTSSASSSINDNINDLVANSKSSIADVEVKFSGPHVLLKTLSPPIPGQATKIISALEDLALEILQVTITTAEQGVLNSFTIKIGVECQLSAEDLAQQVQQTFSPHGIPS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1875 312 MobiDBLite consensus disorder prediction 38 72 - -
Acco05g1875 312 Coils Coil 125 145 - -
Acco05g1875 312 PANTHER TRANSCRIPTION FACTOR FAMA 18 305 IPR044283 GO:0003700|GO:0010052
Acco05g1875 312 SMART finulus 87 138 IPR011598 GO:0046983
Acco05g1875 312 CDD bHLH_AtFAMA_like 84 155 - -
Acco05g1875 312 Pfam Helix-loop-helix DNA-binding domain 83 132 IPR011598 GO:0046983
Acco05g1875 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983
Acco05g1875 312 MobiDBLite consensus disorder prediction 165 190 - -
Acco05g1875 312 MobiDBLite consensus disorder prediction 38 85 - -
Acco05g1875 312 MobiDBLite consensus disorder prediction 159 212 - -
Acco05g1875 312 Gene3D - 71 147 IPR036638 GO:0046983
Acco05g1875 312 MobiDBLite consensus disorder prediction 191 212 - -
Acco05g1875 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 154 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1875 Acco-ChrAcco05 35189853 35191522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1875 5 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.148 1.60e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco05g1875 HLH 1.2e-09 No_clan