Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1848 ATGATAATCAAGCGGAACTTGAAAACCCAAATGCCGAGTCTGAAACGGTGCAAACTCGGTGACTCGGCCGGGGACGACGACGACTGCTCCGCGGCTCGGAAGAAGAGGAAGACTAATGGGTATTACCCATTGAATCTTCTCGGCGATGTCGCCGCCGGTATCCTTCCTGTTAGCTTCCATGGCTTACTGGGCGCTGGTGTTTCTGAGAAGGGCTTTTCTGCATCATGGTGTGAGGAAGTCCCGTGCTCCCCTGTTGAGGCGGAGTCAAAGGCCAGGGTTGGGAACTCTGAAACAGCTAGGATGAATCGGCCTGCTGAGGAACCACGGCCGCCGCTGGTCAGAACGTCAAGAGGCCGAGTTCAGGTACTCCCTTCGCGTTTCAACGATTCAGTTATTGAGAATTGGAGGAAAGAGAGTAAGACGAACTCTCGTGATTATAGTTATGAAGACGAACTAGATAGTAGAAAGGAGAATAGTTTTAGGACGCCGAAATCATACAATCAGAATACCAGAAAAGGGAGAAATGATGATAAAAATGGCTATAAGTCTCGAAAGTATTCGGCATTGTATGAGGAGGATGATGAGGTGAGAGGGGAGGGGCCTGTAAGGTATAGGAATATTGATACGAGGAAGTATTCAACTTCTAGCGCACTCAATCCGAAGCGCGAGCAATTAATTGAAGATGAGAGACGCGGATTTATGTATATGGACGAAGTCGATATAACAGTTAACGAGAGATTTTTGAAGGATAATGGGGAGAAAAAGGATGGATTGTATGGACCAGAAGACTTTTACGCTGGTGACATAGTGTGGGCCAGAGCAGGGAAGAAGGAGCCCTTTTGGCCAGCCATTGTCATCGATCCAATGTCTCAGGCACCTGAGCTGGTCCTTAGGTCTTGTATACCTGACGCAGCTTGTGTGATGTTTCTCGGGTACTCTGCAAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTCCCATTTATAGATTATGTAGACAGGTTTCAGGGACAGGCGGAACTGAGTTTCTATAGCGCTTCTGATTTTCAAGTAGCAATAGAGGAGGCATTCTTGGCAGATCGGGGATTTACAGAGAGGTTGATAGCAGATATAAATTTAGCAGCTGGCAACACAGGGTATGATGAAACCTTTCCAAAAGCCATACTGGAGGCCCCTGGTTCAAAGCAGTTTGCAGGATGTCACTTTCTGAGCCTGGATTTTTTTGATAAGAGGAAAGATACACGGCCCTGTGAAGCTTGTGGCTTGGATCTTCCTTTTAAAACATCAAAGAAAATGAAGGATTCAACTCCTGGTGGCCAATTTTTATGTAAAACATGTGCCAGGCTAACAAAATCGAAACATTATTGTGGCATATGCAAGAAAATTTGGAATCATTCAGATAGTGGAAGCTGGGTGCGTTGTGATGGATGTAAAGTTTGGGTGCATGCAGAATGTGACAAAATTTCCAGCAACCTTTTCAAGAATCTTGGAGGAACTGATTATTACTGCCCAACATGTAAAGCAAAGTTTGACTTTGAGTTATCTGATTCAGAAAAGTCACAGCCAAAAGTCAAATGGAACAAGAACAACGGGCAGCTAGTGCTACCAAACAAAGTCACTGTTCTCTGCAATGGTGTGGAAGGCGTATATTTTCCTAGCCTTCACTTAGTTGTGTGCAAATGCGGTTTTTGTGGGACGGAGAAGCAAGCACTTAGTGAATGGGAACGTCACACAGGTTCCAAATCAAGAAATTGGAGAACAAGTGTTAGGGTGAAAGGCTCTATGCTCCCACTGGAACAATGGATGCTGCAATTGGCTGAATTTCATGAAAATGCTCAAGTTTCTGTCAAACCTAAAAAACCTTCTTTAAAAGAAAGGAAGCAGAAGTTGCTTGCATTTTTGCAAGAGAAGTATGAACCCGTTTATGCTAAGTGGACAACAGAACGGTGTGCTGTTTGTAGATGGGTAGAAGATTGGGACTATAATAAAATTATCATTTGCAACAGGTGTCAAATAGCTGTTCATCAAGAGTGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCTGACATTAAACGAGAGTGTTGTCTTTGTCCTGTAAAGGGTGGTGCGCTAAAGCCAACTGATGTGGACACACTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAAAAGATGGAGCCTGCTTTGGGTATTCTGAGTATTCCATCAAATTCGTTTGTAAAGATTTGTGTTATATGTAAGCAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTTCATGCCATGTGTGCGTCAAGAGCTGGATATCGCATGGAGTTGCATTGTTCAGAGAAAAACGGTAGGCAGACAACAAAAATGGTTTCTTATTGTGCATACCACAGGGCTCCAAATCCAGACACTGTTTTGATTATGCAAACCCCTCTTGGAGTGATTTCTACCAAAAGCCTTCTCCAAAATAAGAAAAAATATGGGTCAAGGTTAATTTCATCCAATAGAATAAAGCTAGAAGACACTCCTGTAGAGAACATTGAGGATCAACCATTTTCTGCTGCAAGGTTCCGTGTCTTTCAAAGAACAAATCTCAGCAAAAAGAGAGCAGCAGATGAGGCCGTTTGTCATCGAGTGAAAGGTCATTGCCATCATCCTTTAGACACAATTAAGAGATTAAATGCATACAGGGTAATAGAGGAGCCTCCAACATTTTCTTCTTTTAGAGAACGTTTGTACCACTTACAGAAAACCGAAAATGAACGGGTTTGCTTCGGTAGATCGGGCATACATGGATGGGGCCTCTTTGCTCGTAGAAATATACAAGAAGGAGAAATGGTTCTTGAGTATCGTGGTGAACAAGTGAGACGCAGCATGGCTGATCTGAGGGAAGCACGTTATAAGAAAGAAGGCAAAGATTGCTATCTTTTTAAGATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGAAATATTGCCCGGCTTATCAACCATTCTTGTATGCCGAATTGCTATGCAAGAATTATGAGTGTCGGTGATGATGAGAGCCGTATCGTACTCATTGCCAAGACCAATGTTACTGCTGGTGATGAACTAACTTATGACTACTTGTTTGATCCTGATGAGCCAGATGAAAACAAAGTACCATGTTTGTGTAAAGCTCCAAATTGCCGGAAATTCATGAACTAG 3258 0.4306 MIIKRNLKTQMPSLKRCKLGDSAGDDDDCSAARKKRKTNGYYPLNLLGDVAAGILPVSFHGLLGAGVSEKGFSASWCEEVPCSPVEAESKARVGNSETARMNRPAEEPRPPLVRTSRGRVQVLPSRFNDSVIENWRKESKTNSRDYSYEDELDSRKENSFRTPKSYNQNTRKGRNDDKNGYKSRKYSALYEEDDEVRGEGPVRYRNIDTRKYSTSSALNPKREQLIEDERRGFMYMDEVDITVNERFLKDNGEKKDGLYGPEDFYAGDIVWARAGKKEPFWPAIVIDPMSQAPELVLRSCIPDAACVMFLGYSANENQRDYAWVKHGMIFPFIDYVDRFQGQAELSFYSASDFQVAIEEAFLADRGFTERLIADINLAAGNTGYDETFPKAILEAPGSKQFAGCHFLSLDFFDKRKDTRPCEACGLDLPFKTSKKMKDSTPGGQFLCKTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLGGTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNNGQLVLPNKVTVLCNGVEGVYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKSRNWRTSVRVKGSMLPLEQWMLQLAEFHENAQVSVKPKKPSLKERKQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQNKKKYGSRLISSNRIKLEDTPVENIEDQPFSAARFRVFQRTNLSKKRAADEAVCHRVKGHCHHPLDTIKRLNAYRVIEEPPTFSSFRERLYHLQKTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSMADLREARYKKEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVTAGDELTYDYLFDPDEPDENKVPCLCKAPNCRKFMN 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1848 1085 ProSitePatterns Zinc finger PHD-type signature. 654 699 IPR019786 -
Acco05g1848 1085 SUPERFAMILY FYVE/PHD zinc finger 458 514 IPR011011 -
Acco05g1848 1085 MobiDBLite consensus disorder prediction 170 186 - -
Acco05g1848 1085 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 822 IPR013083 -
Acco05g1848 1085 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 453 515 IPR013083 -
Acco05g1848 1085 SMART PHD_3 653 700 IPR001965 -
Acco05g1848 1085 SMART PHD_3 459 511 IPR001965 -
Acco05g1848 1085 SMART PHD_3 764 820 IPR001965 -
Acco05g1848 1085 FunFam Histone-lysine N-methyltransferase 703 822 - -
Acco05g1848 1085 Pfam PHD-zinc-finger like domain 707 819 - -
Acco05g1848 1085 ProSiteProfiles SET domain profile. 943 1060 IPR001214 GO:0005515
Acco05g1848 1085 ProSiteProfiles Zinc finger PHD-type profile. 651 702 IPR019787 -
Acco05g1848 1085 Pfam PWWP domain 267 360 IPR000313 -
Acco05g1848 1085 SUPERFAMILY Tudor/PWWP/MBT 259 363 - -
Acco05g1848 1085 SMART set_7 943 1066 IPR001214 GO:0005515
Acco05g1848 1085 Pfam PHD-finger 666 700 - -
Acco05g1848 1085 FunFam Histone-lysine N-methyltransferase 641 702 - -
Acco05g1848 1085 Pfam SET domain 954 1059 IPR001214 GO:0005515
Acco05g1848 1085 PANTHER PHD FINGER PROTEINS 95 526 - -
Acco05g1848 1085 CDD PHD_ATX3_4_5_like 653 699 IPR042011 -
Acco05g1848 1085 Pfam PHD-finger 459 512 IPR019787 -
Acco05g1848 1085 FunFam Histone-lysine N-methyltransferase 917 1085 - -
Acco05g1848 1085 SUPERFAMILY FYVE/PHD zinc finger 652 716 IPR011011 -
Acco05g1848 1085 ProSiteProfiles Zinc finger PHD-type profile. 457 513 IPR019787 -
Acco05g1848 1085 SMART PostSET_3 1069 1085 IPR003616 -
Acco05g1848 1085 CDD PWWP_AtATX3-like 265 369 - -
Acco05g1848 1085 CDD SET_SETD1-like 930 1081 - -
Acco05g1848 1085 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1085 IPR025780 -
Acco05g1848 1085 MobiDBLite consensus disorder prediction 139 186 - -
Acco05g1848 1085 SUPERFAMILY SET domain 935 1082 IPR046341 -
Acco05g1848 1085 ProSiteProfiles Post-SET domain profile. 1069 1085 IPR003616 -
Acco05g1848 1085 Gene3D - 261 365 - -
Acco05g1848 1085 ProSiteProfiles Extended PHD (ePHD) domain profile. 705 820 IPR034732 -
Acco05g1848 1085 Gene3D SET domain 839 1085 IPR046341 -
Acco05g1848 1085 CDD ePHD_ATX3_4_5_like 708 819 IPR041955 -
Acco05g1848 1085 MobiDBLite consensus disorder prediction 87 120 - -
Acco05g1848 1085 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 702 IPR013083 -
Acco05g1848 1085 CDD PHD_TCF19_like 460 510 - -
Acco05g1848 1085 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1848 Acco-ChrAcco05 34925113 34933625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1848 654 819 C2H2 Transcription Factor Family AT3G14740 32.948 6.17e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco05g1848 zf-HC5HC2H_2 2.9e-27 CL0390