Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1836 ATGGGTTGCTGTAGTTCGAAGCTACCTAAATCACCTGGTTATGCGGATCCCGGCATTCTTGCTGCTGAGACACCTTTTTCAGTAAGTGAAGTAGAGGCCTTACACGTTCTCTTTCAGAAATTGAGCAACACAATTATTCAAGATGGACTAATTCACAAGGAAGAATTCCAGCTTGCTCTTTTCAGTAATAGGAACAAAAGGAATCTGTTTGCTGACAGGGTTTTTGATTTATTTGATATCAAGCGCAATGGGGTTATTGAGTTTGGGGAATTTGTTCGATCACTGGGTATTTTTCACCCAAAGGCACCTATTGAAGACAAAATCAAATTTGCCTTTAGGTTGCATGATCTGAGGCAGACAGGGTACATTGAACGAGAGGAGCTGAAAGAGATGATATCAGCAATACTGCAGGAATCTGATATCATACTTTCTGATGATGTCGTCGAAACCATAGTGGATAAGACATTTAGTGATGCTGATACAAAAGGTGATGGAAAGATTGATCAAGAGGAATGGAAGGAATTTGTGTTCAAACATCCATCTTTATTGAAGAACATGACTCTACCACATCTAACGGATATAACCTTGGCATTTCCTAGTTTTATTGAAAAATCAAACACGGAAGACTTGGAGACACAAGAACTTGGAGATATTAGGTGTCTAGCACTTGAGAAGGTGGTTGAATCACTCGAGTTACCATGCAAGTATTATTCCCTTGGATGCCCGGAAATCTTTCCTTACTACAGCAAACTCAAGCATGAGGCAGTCTGCAATTTCAGACCATACAATTGTCCATATGCTGGTTCCGAATGCTCTGTAGCTGGGGATATCCCATTTCTTGTTGCTCATTTGAGGGATGATCATAAGGTAGATATGCACACAGGTTGTACCTTCAATCATCGGTATGTGAAATCAAATCCACGTGAAGTAGAGAATGCTACTTGGATGCTCACGGTCTTTCATTGCTTTGGCCAGTACTTCTGCCTTCATTTTGAAGCTTTTCAGCTTGGCATGGCTCCTGTGTACATGGCATTTCTTCGTTTTATGGGAGATGAGAATGATGCCCGAAGCTACAGTTATAGCCTAGAGGTTGGGGCAAATGGTAGGAAACTTATCTGGGAAGGCAATCCCCGGAGTATCCGGGATAGCCACCGGAAAGTTAGGGATAGCCATGATGGCCTTATTATCCAACGAAACATGGCCTTATTTTTCTCTGGTGGGGACAGGAAGGAACTCAAGCTTAGAGTTACAGGAAGAATTTTGAAGGAACAACAGAATCCTGATGCTGGGGTGTGCATACCGAATCTTTGTAGCTGA 1317 0.4207 MGCCSSKLPKSPGYADPGILAAETPFSVSEVEALHVLFQKLSNTIIQDGLIHKEEFQLALFSNRNKRNLFADRVFDLFDIKRNGVIEFGEFVRSLGIFHPKAPIEDKIKFAFRLHDLRQTGYIEREELKEMISAILQESDIILSDDVVETIVDKTFSDADTKGDGKIDQEEWKEFVFKHPSLLKNMTLPHLTDITLAFPSFIEKSNTEDLETQELGDIRCLALEKVVESLELPCKYYSLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSECSVAGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARSYSYSLEVGANGRKLIWEGNPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRILKEQQNPDAGVCIPNLCS 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1836 438 CDD Sina 290 418 - -
Acco05g1836 438 FunFam E3 ubiquitin-protein ligase SINAT3 226 284 - -
Acco05g1836 438 CDD EFh 107 176 IPR002048 GO:0005509
Acco05g1836 438 SUPERFAMILY EF-hand 18 199 IPR011992 -
Acco05g1836 438 PANTHER CALCINEURIN B 2 209 IPR045198 GO:0005509|GO:0019722|GO:0019900
Acco05g1836 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 283 IPR013083 -
Acco05g1836 438 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Acco05g1836 438 SMART efh_1 151 179 IPR002048 GO:0005509
Acco05g1836 438 SMART efh_1 107 135 IPR002048 GO:0005509
Acco05g1836 438 SMART efh_1 70 98 IPR002048 GO:0005509
Acco05g1836 438 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Acco05g1836 438 Gene3D - 17 210 - -
Acco05g1836 438 Pfam EF-hand domain pair 105 175 IPR002048 GO:0005509
Acco05g1836 438 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 284 417 IPR008974 GO:0005515
Acco05g1836 438 ProSiteProfiles EF-hand calcium-binding domain profile. 103 138 IPR002048 GO:0005509
Acco05g1836 438 PRINTS Recoverin family signature 74 95 - -
Acco05g1836 438 PRINTS Recoverin family signature 167 187 - -
Acco05g1836 438 PRINTS Recoverin family signature 121 139 - -
Acco05g1836 438 ProSiteProfiles Zinc finger SIAH-type profile. 229 289 IPR013010 GO:0008270
Acco05g1836 438 FunFam calcineurin B-like protein 3 16 209 - -
Acco05g1836 438 FunFam E3 ubiquitin-protein ligase SINAT5-like 285 417 - -
Acco05g1836 438 SUPERFAMILY TRAF domain-like 229 420 - -
Acco05g1836 438 Pfam Seven in absentia protein family 218 417 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1836 Acco-ChrAcco05 34737476 34741577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1836 195 424 C3H Transcription Factor Family AT2G41980 76.087 1.33e-128 372