Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1799 ATGGCGGGCGATTCAATTGATCACGCCTCACTCATTCCAGCATCTGAATTACTTTTTCATAATGTCCTTAGTATATCTGATATCACCAAAGCAGCCAATCAGATTCTGATTCAGAAGGATAATTTCAGAAAATTCTCAACTTACTTGGAGAAGGTCTCATTAATTTTAAAACGACTATCAAAAGAAGACATACACCATGCAGAGAGCTTGAAAAATTCCCTTGGTGTCCTCAACCAACAAGTTAAAGCTGCTAAACAGCTGGTTTCTGAGTGCAACTCCAAGAGTAAGATTTATCTTTTCATCAGTTCCAGAAAGATTACTGAGAATTTGGAGTGTTGTACAAAAAACATAAGCCGAGCTGTGAGCCTCATCCCTCTCACCTCTTTGGATGTCTCTTCTGGTCTAAGTAAACAAATAAGTGAGCTATGCCAGAACATGCTAGATGATGAGTATAAAGCAGCTGCAGCAGAAGAGGAAATTCTGGAAAAACTTGAGTTAGCAATACAAGAAGGAAATGCTGAGCGCTCTACCGCGAATCAGTTTCTGGCTCGTATTGTGGATGTCATTGGGATCTCAACTGAGCATGCTGTTATAAAGAGAGAATTTAAAGACTTGAAAAGTGACATGCAAATTTCTGAGCCAAGAAGAGATATAGCAGAAGCTCTACATATGGAGCAGATTGTTGGATTGCTTGAAAAAGCTGATTCGGTTACTTCATCACAAGAGAAGGAGAGGAAGTATTTTGAAAAGCGAAATTCCCTGGGACGACAGCCGTTGGAGCCGTTACATTCGTTTTACTGTCCAATCTCACTTGATATCATGGAAGATCCTGTGGAGACTTCTTCTGGCAAGACATTTGAGAGAAAGGCAATAGAGAAGTGGCTTGCAGCAGGGAATAAGAACTGTCCCTTAACCATGTTGCCTCTGGATACTTCAAAATTAAGACCTAATAAGACTCTTCGACAGTCAATTCAAGAATGGAAAGATAGGAACACCATGATTACCCTTTCTACTCTCAAGTCCAAGCTTGAGAGCGATGATGAAGTGGAAATACTTCAATCCTTGGAAAAATTGCAGGGCCTCTGCTCGGAAAGACAGATGCACCGAGAATGGGTAAAAATGGAGAATTACATCACAACTCTGATCAAGCTCCTCGGTGCTAGGAATAGAGAAATAAGGAAGTGTGTTCTATCCACCCTGTCTTTGCTTGCAAAGGACAATGAAGAGAACAAGGAAGATGTTGCTAAAGTTGACCATGCACTAGAATCAATTGTTCACTCACTCGCACGTCCAATAGAGGAAAGTAAGTTAGCAATGAAGTTGCTGTTAGAATTGTCTAGAAGTACTACAGTGCGTGATCTCATAGGAGATGTTCAAGGAAGCATACTCCTCCTGGTCACAATGTTAAGCAGTGATGATGCTGAAGCAGCCCATGATGCACGTGAGCTGCTGGATAATCTCTCTTTCCTTAACCACAATGTTATAGAGATGGCAAAGGCAAATTATCTCAAGCCTTTGCTGCAGAACCTTTCTTCAGGAACAGAAAATGTGAAGATAATCATGACCAGAACTTTATCAGAGATTGAATTGACTGACCATAATAAAGCATCAATAGTCAAAGATGGGGCACTGCAGCCACTTCTCCAGTTGCTCTCTAATCCCGACGTGCAAATCAAGGAAGTAGCTGTGAAAGCTCTTCTACAGCTTTCAACCTTGCCAGAAAATGGCCTGCAGATGATTAGGGAGGGTGTTGCTCAATCACTATTCGAGCTGCTATATCGTCACAGCTTACAATCAACCGCTCTGCGGGAACAGGCAACTGACACTATGATGCATCTTGCCATGTCAACCACTCACCAACGAGCTGATGAAGTTCAAGTTTCATTGTTAGATTCTGAGGATGACGTATTTAAATTCTTCTCACTTGTTTCCTTCACCGGACCTTATATACAAAGCAAGATTCTGGAAACTTTCCTGGCAATGTGCCAATCTCCCTCTGGTCTCACCATCAGAGAAAGGTTAAGACAGCTCTCAGCTGTCCAAGTATTAGTTCAATTGTTAGAGCTCAACAACCAAACTGTGCGGGTAAACGCGGTGAAGCTGTTCTATTACATGACAGAAAGCGGTGATTGCAGAAACTTTACATCACATATAACTGAAAGATGCATCAATGTCTTGCTCACCATCATCAAGACCACTGAAGATGCGGAAGAAATGGTTTCTGCTATGGGTATCATCTCAAGACTTCCAAGGGAACCACAAATAACCCGGTGGCTTTTAGATTCTGGGGCAGTAAAAATCATCTTGGATTGTCTTTCAGACCGACATAAGCATGCCGCGCTCAAACGTCAGGTCATTGAGAACTCTGTTCAAGCTCTTTGCCGCTTTACTGTCTCAACAAACCTAGAGTGGCAAAAGGCAGTAGCTCAACAAGGCATCATCCCTATCCTGGTGCATTTGCTGGAATCTGGGACACCTCTTTTGAAACAAAATGCAGCCATTTCAATCAAGCAGTTTTCAGAAAGCTCATGGCTCTTAAGCAAGCCGATAAAAAAGTCAGGTATATTCAAATTCTGCTTTGTACCTCATGAAACCGGCTGCCCGGCACACCTAGGCATCTGCACAGTTGAGTCTTCATTCTGCATCATAGAGGCTGATGCTTTGAAGCCCCTTGTGAGGTTGCTTAGAGAGCAAGAAATTGGAGCATGCGAAGCTTCCTTAGATGCACTTTTGACTTTGATTCATGGTGGAACACCACAAGGTGGTGGGTGTAAGGTACTTGCCGATGCAGATGCTATTACTCCACTAATAAATTTATTGAGTCTTCAGTCTGACAGATTGGAGGAAAAAATTCTAGTAGCCTTGGAGAAAATTTTTCAAGTGGATGAAATAAAGAACAAGTATAAAGCTTCAGCCACAATGCCTTTGGTAGACATGACCCAGAGGAAAGATAGCCACTTGAGAAGTCTTGCTGCCAGAGTCCTTGCACAATTGGGTGTGCTTGAGAAACAGTCTTCTTATTTTTAA 3027 0.4215 MAGDSIDHASLIPASELLFHNVLSISDITKAANQILIQKDNFRKFSTYLEKVSLILKRLSKEDIHHAESLKNSLGVLNQQVKAAKQLVSECNSKSKIYLFISSRKITENLECCTKNISRAVSLIPLTSLDVSSGLSKQISELCQNMLDDEYKAAAAEEEILEKLELAIQEGNAERSTANQFLARIVDVIGISTEHAVIKREFKDLKSDMQISEPRRDIAEALHMEQIVGLLEKADSVTSSQEKERKYFEKRNSLGRQPLEPLHSFYCPISLDIMEDPVETSSGKTFERKAIEKWLAAGNKNCPLTMLPLDTSKLRPNKTLRQSIQEWKDRNTMITLSTLKSKLESDDEVEILQSLEKLQGLCSERQMHREWVKMENYITTLIKLLGARNREIRKCVLSTLSLLAKDNEENKEDVAKVDHALESIVHSLARPIEESKLAMKLLLELSRSTTVRDLIGDVQGSILLLVTMLSSDDAEAAHDARELLDNLSFLNHNVIEMAKANYLKPLLQNLSSGTENVKIIMTRTLSEIELTDHNKASIVKDGALQPLLQLLSNPDVQIKEVAVKALLQLSTLPENGLQMIREGVAQSLFELLYRHSLQSTALREQATDTMMHLAMSTTHQRADEVQVSLLDSEDDVFKFFSLVSFTGPYIQSKILETFLAMCQSPSGLTIRERLRQLSAVQVLVQLLELNNQTVRVNAVKLFYYMTESGDCRNFTSHITERCINVLLTIIKTTEDAEEMVSAMGIISRLPREPQITRWLLDSGAVKIILDCLSDRHKHAALKRQVIENSVQALCRFTVSTNLEWQKAVAQQGIIPILVHLLESGTPLLKQNAAISIKQFSESSWLLSKPIKKSGIFKFCFVPHETGCPAHLGICTVESSFCIIEADALKPLVRLLREQEIGACEASLDALLTLIHGGTPQGGGCKVLADADAITPLINLLSLQSDRLEEKILVALEKIFQVDEIKNKYKASATMPLVDMTQRKDSHLRSLAARVLAQLGVLEKQSSYF 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1799 1008 SUPERFAMILY RING/U-box 249 333 - -
Acco05g1799 1008 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Acco05g1799 1008 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Acco05g1799 1008 Gene3D - 436 856 IPR011989 -
Acco05g1799 1008 Gene3D - 20 127 IPR036537 GO:0007166
Acco05g1799 1008 SUPERFAMILY ARM repeat 335 491 IPR016024 -
Acco05g1799 1008 SMART arm_5 919 960 IPR000225 GO:0005515
Acco05g1799 1008 SMART arm_5 875 915 IPR000225 GO:0005515
Acco05g1799 1008 SMART arm_5 752 798 IPR000225 GO:0005515
Acco05g1799 1008 SMART arm_5 490 530 IPR000225 GO:0005515
Acco05g1799 1008 SMART arm_5 365 405 IPR000225 GO:0005515
Acco05g1799 1008 SMART arm_5 666 707 IPR000225 GO:0005515
Acco05g1799 1008 SMART arm_5 801 841 IPR000225 GO:0005515
Acco05g1799 1008 SMART arm_5 531 571 IPR000225 GO:0005515
Acco05g1799 1008 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Acco05g1799 1008 Coils Coil 67 87 - -
Acco05g1799 1008 SUPERFAMILY ARM repeat 503 914 IPR016024 -
Acco05g1799 1008 Gene3D - 868 1005 IPR011989 -
Acco05g1799 1008 Pfam Armadillo/beta-catenin-like repeat 532 570 IPR000225 GO:0005515
Acco05g1799 1008 CDD RING-Ubox_PUB 265 314 IPR045210 -
Acco05g1799 1008 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Acco05g1799 1008 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1008 - -
Acco05g1799 1008 Pfam MCAfunc domain 25 141 IPR045766 -
Acco05g1799 1008 SUPERFAMILY ARM repeat 880 999 IPR016024 -
Acco05g1799 1008 Gene3D - 339 435 IPR011989 -
Acco05g1799 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 338 IPR013083 -
Acco05g1799 1008 Coils Coil 154 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1799 Acco-ChrAcco05 34376669 34380347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1799 263 1008 U-box Gene Family AT1G76390 27.869 7.81e-64 230