Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1779 ATGGACTATGTGGCGCTGTGGAGAAACCCTATCGAACAGAGGGAGAAGGCACAAGGGAAATCGGCCGCGATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAATCCAGTGATACCATTGACAATGTCAAAGCTAAGATTCAGGACAAAGAAGGCATTCCACCGGACCAACAGAGGCTGATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGTACTCTTGCCGACTATAACATTCAGAAAGAGTCAACATTGCACCTTGTTTTGAGGCTTAGGGGTGGCATTATTGAGCCGTCATTGATGGCATTGGCCAGGAAATACAATCAGGACAAGATGATCTGCCGCAAGTGTTATGCTCGTTTACACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGCTGAGGCCAAAGAAGAAGATCAAGTAA 456 0.4978 MDYVALWRNPIEQREKAQGKSAAMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1779 151 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Acco05g1779 151 PANTHER UBIQUITIN 24 110 - -
Acco05g1779 151 Pfam Ubiquitin family 26 97 IPR000626 GO:0005515
Acco05g1779 151 SUPERFAMILY Zn-binding ribosomal proteins 99 150 IPR011332 GO:0006412
Acco05g1779 151 SMART ubq_7 24 95 IPR000626 GO:0005515
Acco05g1779 151 CDD Ubl_ubiquitin 24 99 - -
Acco05g1779 151 SMART Ribosomal_L40e_3 100 151 IPR001975 GO:0003735|GO:0005840|GO:0006412
Acco05g1779 151 ProSitePatterns Ubiquitin domain signature. 50 75 IPR019954 -
Acco05g1779 151 FunFam Ubiquitin-60S ribosomal L40 fusion 24 101 - -
Acco05g1779 151 PRINTS Ubiquitin signature 55 75 IPR019956 -
Acco05g1779 151 PRINTS Ubiquitin signature 34 54 IPR019956 -
Acco05g1779 151 PRINTS Ubiquitin signature 76 97 IPR019956 -
Acco05g1779 151 Pfam Ribosomal L40e family 101 150 IPR001975 GO:0003735|GO:0005840|GO:0006412
Acco05g1779 151 Gene3D - 103 151 IPR038587 -
Acco05g1779 151 Gene3D - 18 102 - -
Acco05g1779 151 SUPERFAMILY Ubiquitin-like 22 99 IPR029071 -
Acco05g1779 151 FunFam ubiquitin-60S ribosomal protein L40 102 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1779 Acco-ChrAcco05 34191591 34194389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1779 24 151 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 8.92e-93 263