Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1777 ATGATGGAGGTTGATGAAGAGTATATTCAAGGATCAGAAGAAAGCTTCATCAGCTGCTCAGAGCCACCACCTCAGAATCCAAGAAAGAAGAATAAAGTGGTGAACAAGAGGAGGTTTAGTGATGAACAAATCAGATCATTGGAGTGCATATTCGAGTCAGAGTCCAAGTTAGAACCAAGGAAGAAGATCCAAGTAGCAAGAGATCTTGGGTTGCAGCCTCGCCAAGTAGCCATATGGTTTCAGAACAGAAGAGCAAGGGGGAAATCCAAATGGATAGAGCAAGAGTACAGGAAGCTCAGAGACGAGTATGACAATTTAGTGTCCAGGTTTGAGTCCCTCAAGAAAGAGAAGGAGTCCTTGCAAGTAGAGTTGCAGAATCTGCATGATCTGATGGAGACATCTAAGAATGATGAAGGGAAAAAGAGTAAAGATTGTATGAGTAATGAAGTAAAACCAAGTTCTTCTTATGAGGTTTTGGATGAGGTCAGAGATAGAGGAGGCATGCATTTACAAGATCAAAGTGAAATGATGAGCAAGAATAAAAATGGTTATTGTGAGGATACAGAATACCAACTTCTGAGAATGGACGAGCTTGAAAAATGGTACAGTAGTGGGGATCCAAGTGGCCTCTTAGATCAACCTTGTAGTTCACAATGGTTTGATTTCTGGACTTGA 675 0.4119 MMEVDEEYIQGSEESFISCSEPPPQNPRKKNKVVNKRRFSDEQIRSLECIFESESKLEPRKKIQVARDLGLQPRQVAIWFQNRRARGKSKWIEQEYRKLRDEYDNLVSRFESLKKEKESLQVELQNLHDLMETSKNDEGKKSKDCMSNEVKPSSSYEVLDEVRDRGGMHLQDQSEMMSKNKNGYCEDTEYQLLRMDELEKWYSSGDPSGLLDQPCSSQWFDFWT 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1777 224 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Acco05g1777 224 SMART HOX_1 28 94 IPR001356 GO:0003677
Acco05g1777 224 MobiDBLite consensus disorder prediction 1 34 - -
Acco05g1777 224 PRINTS Lambda-repressor HTH signature 61 70 IPR000047 GO:0003677
Acco05g1777 224 PRINTS Lambda-repressor HTH signature 70 86 IPR000047 GO:0003677
Acco05g1777 224 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 176 IPR045224 GO:0003700
Acco05g1777 224 Pfam Homeobox associated leucine zipper 91 131 IPR003106 GO:0006355|GO:0043565
Acco05g1777 224 Pfam Homeodomain 36 88 IPR001356 GO:0003677
Acco05g1777 224 Gene3D - 18 94 - -
Acco05g1777 224 FunFam Homeobox-leucine zipper protein ATHB-7 14 90 - -
Acco05g1777 224 CDD homeodomain 36 91 IPR001356 GO:0003677
Acco05g1777 224 Coils Coil 96 137 - -
Acco05g1777 224 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Acco05g1777 224 SUPERFAMILY Homeodomain-like 18 89 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1777 Acco-ChrAcco05 34184873 34185653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1777 38 157 Homeobox Transcription Factor Family AT3G61890 60.833 3.01e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco05g1777 Homeodomain 8.4e-16 CL0123