Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1762 ATGTCACAGCAGAGACAGAATAATAATAATAGGTTGATGATGATGAGTGCGAGTAATGCAAAACAAGTTGGTGACACAACTTATACAAAGATCTTCGTGGGAGGCTTGGCTTGGGAGACGAAAAGAGACTCTCTCAGACGCTATTTTGAGCAGTTTGGAGAAATATCAGAGGCTGTTGTTATCACTGACAGAAACACTGGAGCATCCAAAGGCTATGGCTTCGTGACTTTTAAGAATCCTCAATCTGCAGAGAGAGCTTGTCAGGATCCCTATCCTTTGATCGATGCGAGGAGGGCTAATTGCAATCTTGCATTTCTTGGTGCTCGCAAATTCAACCCATCATCCACCTCAGGAGGAGCTGAGAAATTTAACACCGATTCATGGGCTATGGTACCAGTCCCAGTTCAAGGTTCTTCATATTACAATCAGCACATACCTCATTACACTTTTCCCTTTCCACCACCCTATAGGTATCCTCCTGCTTATCCTCCCTCACAAGAAATCTATGCAATGAACTACTATAATATTTATGGAGGGCATCAGGTTCCATTTCGATGGCGTCCAACAACATACCAACCATTTTATGGGCAAAGTAATTCAATGAGATTGCCAGCAGAAGCAGCAATAATGGGGAAGAAGACACACTACTCTGATATCCCACCAGAACCTATTTCAGTTTCTCCTTCAATACCCACCTCTGGATTAGTCACAGGGACAGTTTCTTCTGCTGCAGCAGCCAAGGTAGGAGCACCATCCCCTGAACACAAATCTTCAGCTTAG 780 0.4385 MSQQRQNNNNRLMMMSASNAKQVGDTTYTKIFVGGLAWETKRDSLRRYFEQFGEISEAVVITDRNTGASKGYGFVTFKNPQSAERACQDPYPLIDARRANCNLAFLGARKFNPSSTSGGAEKFNTDSWAMVPVPVQGSSYYNQHIPHYTFPFPPPYRYPPAYPPSQEIYAMNYYNIYGGHQVPFRWRPTTYQPFYGQSNSMRLPAEAAIMGKKTHYSDIPPEPISVSPSIPTSGLVTGTVSSAAAAKVGAPSPEHKSSA 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1762 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 106 IPR000504 GO:0003723
Acco05g1762 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 88 IPR000504 GO:0003723
Acco05g1762 259 CDD RRM_RBM24_RBM38_like 29 104 - -
Acco05g1762 259 PANTHER BOULE-RELATED 15 219 - -
Acco05g1762 259 SMART rrm1_1 30 102 IPR000504 GO:0003723
Acco05g1762 259 Gene3D - 1 121 IPR012677 -
Acco05g1762 259 SUPERFAMILY RNA-binding domain, RBD 21 104 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1762 Acco-ChrAcco05 33935626 33936887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1762 25 104 C2H2 Transcription Factor Family AT2G19380 42.500 2.55e-15 73.6