Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1759 ATGAGTGGTCGCTTTTCTCGCACTATTTATGTTGGCAACCTGCCCTCAGATATAAGAGAGTCAGAAATTGAGGATCTATTCTACAAGTATGGCCGTATATTGGATATTGAGTTGAAGGTTCCACCTCGACCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCAATTCGTGGTCGTGATGGCTACAATTTTGATGGCTGTCGATTAAGGGTGGAGCTTGCTCATGGTGGTCGGGGACCATCATCAAGTGATCGGCGTGGTTATAGTGGTGGTGGCGGCGGCGGCGGCGGGAGCCGTTTTGGCATATCACGTCATTCTGAATATCGAGTTATTGTTCGTGGACTCCCATCATCTGCATCTTGGCAGGATTTGAAGGATCATATGCGGAAAGCTGGTGATGTATGTTTTGCTGAGGTTTCACGTGATAGTGAAGGTACATTCGGCATTGTTGACTACACTAATTATGACGACATGAAATATGCTGTTCGGAAACTTGATGACACTGAATTTAGAAATCCTTGGGCAAGAGCTTATATTAGGGTGAAGAAATATGAGGCCAGTCCCACAAGGAGCCGCAGCCGCAGCAGGAGCCCTGGCAGAAGCAGAAGTCCTAAAAGGAATAGAAGTAGGTCATTGGAGAGATCTGTATCCAGGTCACCATCTAGGTCTAGATCACCATCACCAATCAAATCTAGGCCAAGATCACCCTCACGCTCTCGGTCTCGGTCACAATCTGCATCACCACACCAGGCTCGGTCAGGCAGTGGTTGA 789 0.4728 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYSGGGGGGGGSRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAVRKLDDTEFRNPWARAYIRVKKYEASPTRSRSRSRSPGRSRSPKRNRSRSLERSVSRSPSRSRSPSPIKSRPRSPSRSRSRSQSASPHQARSGSG 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1759 262 SUPERFAMILY RNA-binding domain, RBD 6 184 IPR035979 GO:0003676
Acco05g1759 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Acco05g1759 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 178 IPR000504 GO:0003723
Acco05g1759 262 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 251 - -
Acco05g1759 262 SMART rrm1_1 115 184 IPR000504 GO:0003723
Acco05g1759 262 SMART rrm1_1 8 78 IPR000504 GO:0003723
Acco05g1759 262 MobiDBLite consensus disorder prediction 224 262 - -
Acco05g1759 262 Gene3D - 2 113 IPR012677 -
Acco05g1759 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 192 IPR000504 GO:0003723
Acco05g1759 262 MobiDBLite consensus disorder prediction 81 106 - -
Acco05g1759 262 Gene3D - 114 191 IPR012677 -
Acco05g1759 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Acco05g1759 262 MobiDBLite consensus disorder prediction 190 262 - -
Acco05g1759 262 FunFam serine/arginine-rich splicing factor SR34A-like 114 191 - -
Acco05g1759 262 FunFam serine/arginine-rich splicing factor SR34A-like 2 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1759 Acco-ChrAcco05 33915464 33918361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1759 4 172 Eukaryotic Initiation Factors Gene Family AT4G34110 27.273 2.04e-08 52.8