Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1713 ATGCTGCAAAAATTGCGCTTCGAGAAGGAGAAAACTGAAGAGCTATTGAAGGTCAAAGATGAGATGTTGAAGCAGAAGGAAGAGAAACTTGGCGAGCGCGGCAGCGAGCAGGAGAAGCTTCAGATGAATAAGAAAATGTCAAATGGATGTGTCGTGAAAAGGCCTTCTCCACCTTACATTTTGTGGAGCAAAGATCAAAGGGCTGAGATTAAGAAAGCGAATCCAGAGGCAGAATTCGAGGATATTTCAAACATGTTAGGGACTTAG 267 0.4345 MLQKLRFEKEKTEELLKVKDEMLKQKEEKLGERGSEQEKLQMNKKMSNGCVVKRPSPPYILWSKDQRAEIKKANPEAEFEDISNMLGT 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1713 88 MobiDBLite consensus disorder prediction 28 51 - -
Acco05g1713 88 Gene3D High mobility group box domain 35 88 IPR036910 -
Acco05g1713 88 Pfam HMG (high mobility group) box 52 87 IPR009071 -
Acco05g1713 88 SUPERFAMILY HMG-box 42 87 IPR036910 -
Acco05g1713 88 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 44 87 IPR044601 GO:0003677
Acco05g1713 88 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 52 88 IPR009071 -
Acco05g1713 88 Coils Coil 8 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1713 Acco-ChrAcco05 33494549 33495102 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Acco05g1713 HMG_box 1.2e-08 CL0114